Helicobacter pylori PeCan4: HPPC_00445
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Entry
HPPC_00445 CDS
T01322
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpc
Helicobacter pylori PeCan4
Pathway
hpc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPPC_00445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpc03021
]
HPPC_00445
Transcription machinery [BR:
hpc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPPC_00445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
MCR_beta_N
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
ADO06341
LinkDB
All DBs
Position
complement(83624..85672)
Genome browser
AA seq
682 aa
AA seq
DB search
MKKKANEEKAPKKTKAEAAQENKAKENKTKENNKAKENKIKESKIKEARTKESKIKETKA
KEPVPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLV
SSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGD
IKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDD
DDENSVSDSKKDDDSEEDEENEERKRAVSEKDRKRVEKVQESFKALDKAKKEWLKALEAP
VDEKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLE
YKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFD
LDPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGL
MKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQ
ENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSI
DHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIE
SSAIKKLRSPQYGRILRNYLRI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaaaccaaagcagaagccgcacaa
gaaaataaagccaaagaaaataaaactaaagaaaacaataaagccaaagaaaataaaatc
aaagagagcaaaattaaagaagctagaaccaaagaaagcaaaatcaaagaaactaaagcg
aaagaacctgttcctgttaaaaagcttagttttaatgaagcgttagaagaattgttcgct
aattccttaagcgattgcgtttcttatgagtctatcatccaaatcagcgcgaaagtcccc
actctagcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaaaagaaattagtc
agctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaaaaaactgaagaa
aagcaaaaagttttagatgaggaattagaggatggctatgactttttgaaagaaaaggat
tttttagagtggagcagaagcgatagcccggtgcgcatgtatttgcgcgagatgggggat
ataaagcttttaagcaaagatgaagagattgaattgagcaagcaaatccgcttgggcgaa
gacattattttagacgcgatttgctcggtgccgtatttgattgattttatctatgcgtat
aaagacgctttaatcaatcgtgaaagaagggttaaagagcttttcaggagctttgatgat
gacgatgaaaatagcgtgagcgattctaaaaaagatgacgacagcgaagaagatgaagaa
aacgaagaaaggaaaagagccgtttctgaaaaagacaggaagcgtgtagaaaaggttcaa
gaaagctttaaagccctagataaggctaaaaaagaatggctcaaagcccttgaagctcct
gtagatgaaaaagaagatgagctagtgcgtttattgaccctggcttacaaacgccaaacg
ctcaaagacagactctatgacttagagcctaccagcaaactgattaatgaattagtcaaa
acgatggaaaccactttaaaaagcggcgatgggtttgaaaaagagttgaaacgcttggaa
tacaaactgcccttattcaatgacaccctaattgcaaaccataaaaaaatccttgccaat
atcactaacatgactaaagaagatattatcgctcaagtgccagaagcgactatggtgagc
gtgtatatggatcttaaaaagctttttttgactaaagaagcgagtgaagagggctttgat
ttagaccctaacaagctaaaagaaattttagagcaaatcaaaagagggaaattgatttcc
gatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtgagcatcgctaaa
cgattcacgagcagaggtttaccattcttggatttgattcaagagggtaatatcggcttg
atgaaagcggtggataagtttgagcatgaaaagggcttcaagttttctacctatgcgacc
tggtggatcaaacaagctatcagcagagccatagccgatcaagcccgcactatccgcatc
cccattcacatgattgatacgattaatcgcatcaataaagtcatgcgcaaacacattcaa
gaaaacggcaaagagcctgatttggaagtggtggctgaagaagtggggctttcgttagat
aaagtgaagaatgtgattaaggttaccaaagagcctatcagtttggaaaccccagtcggc
aatgatgatgacggcaaatttggggatttcgtggaagataagaatatcgttagctccatt
gatcacatcatgcgagaagatttaaaagcccagattgaaagcgttttggatcagttgaac
gagcgagaaaaagcggtgatccgcatgcgttttgggcttttggacgatgaaagcgatcga
actttagaagaaattggcaaggaattgaatgttactagagaaagggtgcgccagattgaa
agctctgcgatcaaaaaattgagaagcccgcaatacgggcgcattttgagaaactatttg
cgcatttga
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