Helicobacter pylori PeCan4: HPPC_01745
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Entry
HPPC_01745 CDS
T01322
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpc
Helicobacter pylori PeCan4
Pathway
hpc03410
Base excision repair
hpc03430
Mismatch repair
hpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPPC_01745
03430 Mismatch repair
HPPC_01745
03440 Homologous recombination
HPPC_01745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpc03400
]
HPPC_01745
DNA repair and recombination proteins [BR:
hpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPPC_01745
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPPC_01745
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPPC_01745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
ADO06594
LinkDB
All DBs
Position
complement(340206..341756)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERMTSITYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRVAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLHHDKIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLK
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVRKNNIVSLFETLENFDFKVLPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNAERFLKAGEKVSAIFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgcatgacttctatcacttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagctgcactcaaaatcata
gaagccatgcgcgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcgtt
gcaatccctaatcgctttatggatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttgatcatcacggtggataacgggatcaacgcctttgaagccgcgcgattt
tgcaaggaaaaaaattacaccctaatcatcaccgatcaccattgcttacaccatgataaa
atcccagacgcttacgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatgggatccacaagcttttaaaa
aaagaaaaaagccattctagtgagttgttatgcttagcgggcgtggcgactatcgctgat
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttacgccaaagagaagtttttagaaaacgctct
ttaaaagcgagtgatatttcttttaatatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcggacgcagctctccaaac
attgacttgattgacgctttgaatggggtttcttctttactgctcggctatggagggcat
aggcaagcttgtgggttgagcgttagaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttgcctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagtgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggtcttgcgttttaaggataaagaatgcgttaaagaggctatttat
tttaatgctgagcggtttttgaaagcgggcgaaaaggtgagcgcgatttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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