Helicobacter pylori PeCan4: HPPC_02725
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Entry
HPPC_02725 CDS
T01322
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpc
Helicobacter pylori PeCan4
Pathway
hpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPPC_02725 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpc03021
]
HPPC_02725 (rho)
03019 Messenger RNA biogenesis [BR:
hpc03019
]
HPPC_02725 (rho)
Transcription machinery [BR:
hpc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPPC_02725 (rho)
Messenger RNA biogenesis [BR:
hpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPPC_02725 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ADO06783
LinkDB
All DBs
Position
complement(539289..540605)
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSPHKVKTHTPVSGYRIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcgcctacgcataaaagtccgcacaaagtcaaaacacacacgccagtg
agcggttatcgcattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagggggtttgatgggagtttttcagacgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccctaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaaccccc
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggcaggatg
ctggatttattcagccctgtggggaaaggtcaaagggctttgatcgttgcgccaccaaga
actgggaaaacggaactgatgaaagaactcgcccaaggcatcacttctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaagggtcaagtttttagctccacttttgatttgcccgccaataaccacataaga
atcgctgaattagtcttagagagggctaaaaggcgagtggaaatgggtaaggatgtggtg
gttttattggattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacaggcctaagcgctttttt
ggggccgcaaggaatattgaagaaggcgggagcttgacgattatcgctacggcgttgatt
gaaacgggatctagaatggatgaggtgatctttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcaaggaatattgcggacaggcgtatttatccggcctttgatatttta
aaatccggcacacgaaaagacaatatcttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggacgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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