Helicobacter pylori 51: KHP_0092
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Entry
KHP_0092 CDS
T02082
Symbol
rpoD
Name
(GenBank) transcription initiation factor sigma-80
KO
K03086
RNA polymerase primary sigma factor
Organism
hpd
Helicobacter pylori 51
Pathway
hpd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KHP_0092 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpd03021
]
KHP_0092 (rpoD)
Transcription machinery [BR:
hpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KHP_0092 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
DUF1687
SieB
Motif
Other DBs
NCBI-ProteinID:
ACX97311
UniProt:
A0AAI7ZUT9
LinkDB
All DBs
Position
complement(103890..105944)
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AA seq
684 aa
AA seq
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MGSYFMECPMKKKANEEKAPKRAKQEAKAEATQENKAKENKIKESKIKEAKTKESKVKET
KAKEPVPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKK
LVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREM
GDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF
DDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALE
APVDEKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKR
LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEG
FDLDPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNI
GLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKH
IQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVS
SIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQ
IESSAIKKLRSPQYGRILRNYLRI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttattttatggagtgtccaatgaaaaagaaggctaacgaagaaaaagccccc
aaaagagctaaacaggaagccaaagcagaagccacacaagaaaataaagccaaagaaaac
aaaattaaagagagcaaaattaaagaagctaaaaccaaagaaagcaaagtcaaagaaact
aaagcgaaagaacctgttcctgttaaaaagcttagtttcaatgaagcgttagaagaattg
ttcgctaattccttaagcgattgcgtttcttatgagtctatcattcaaatcagcgcgaaa
gtccccactctagcccaagtcaaaaaaatcaaagagttgtgccaaaaataccaaaagaaa
ttagtcagctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaaaaaact
gaagaaaagcaaaaagttttagatgaagaattagaagatggctatgactttttgaaagaa
aaggattttttagagtggagcaggagcgatagcccggtgcgcatgtatttgcgcgaaatg
ggggatataaaacttttaagcaaagatgaagagattgaattgagcaagcaaatccgcttg
ggcgaagacattattttagacgcgatttgctcggtgccgtatttgattgattttatttat
gcgtataaagacgctttaatcaatcgtgaaagaagggttaaagagctttttagaagcttt
gatgatgacgatgaaaatagcgtgagcgatcctaaaaaagatgatgacagcgaagaagat
gaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaagacaggaagcgtgtagaaaag
gttcaagaaagctttaaagccctagacaaggctaaaaaagaatggctcaaagcccttgaa
gcccctgtagatgaaaaagaagatgagctagtgcgtttattgaccctagcttacaaacgc
caaacgctcaaagacagactctatgatttagagcctaccagcaaactgattaatgaatta
gtcaaaacgatggaaaccactttaaaaagcggcgatgggtttgaaaaagagctgaaacgc
ttggaatacaaattgcccttattcaatgacaccctaatcgctaaccataaaaaaatcctt
gccaatatcactaacatgactaaagaggatattatcgctcaagtgccagaagcgactatg
gtgagcgtgtatatggatcttaaaaagctttttttgactaaagaagcgagcgaagaaggc
tttgatctagaccctaacaagctaaaagaaattttagagcaaatcaaaagagggaaattg
atttccgatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtgagcatc
gctaaacgattcacgagcagaggcttgccattcttggatttgattcaagagggtaatatc
ggcttgatgaaagcggtggataagtttgagcatgaaaagggcttcaagttttctacctat
gcgacctggtggatcaaacaagctatcagcagagccatagccgatcaggcccgcactatc
cgcatccccattcacatgattgataccattaatcgcatcaataaagtcatgcgcaaacac
attcaagaaaacggcaaagagcctgatttggaagtggtggctgaagaagtggggctttcg
ttagataaagtgaagaatgtgattaaggttactaaagagcctatcagtttggaaacccca
gtcggcaatgatgatgacggcaaatttggggatttcgtggaagataaaaatatcgttagc
tccattgatcacatcatgcgcgaagatttaaaagcgcaaattgaaagcgttttggatcag
ttgaatgagcgagaaaaagcggtgattcgcatgcgttttgggcttttagacgatgaaagc
gatcgcactttagaagaaatcggcaaggaattgaatgttactagagaaagggtgcgccag
attgaaagctctgcgattaaaaaattgagaagcccgcaatacgggcgcattttaagaaac
tacttgcgcatttga
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