Helicobacter pylori ELS37: HPELS_00455
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Entry
HPELS_00455 CDS
T01798
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpe
Helicobacter pylori ELS37
Pathway
hpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPELS_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpe03021
]
HPELS_00455
Transcription machinery [BR:
hpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPELS_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AFF19675
UniProt:
A0ABC7ZDX9
LinkDB
All DBs
Position
complement(90948..92960)
Genome browser
AA seq
670 aa
AA seq
DB search
MKKKANEEKAPKRAKQEAKAEATQEIKQENKAKESNKAKESKIKEAKAKELIPVKKLSFN
EELEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAI
DKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIEL
SKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKD
DDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRLL
TLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIA
NHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQ
IKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKG
FKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVA
EEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQI
ESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQY
GRILRNYLRI
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccccaaaagagctaaacaggaagccaaagca
gaagccacacaagaaattaaacaagaaaacaaagctaaagaaagcaataaagccaaagag
agcaaaattaaagaagctaaggctaaagaacttatccctgttaaaaagctcagtttcaat
gaagaattagaagaattgtttgctaattccttaagcgattgcgtttcttatgagtccatc
attcaaatcagcgcaaaagtccccactctagcccaagtcaaaaaaatcaaagaattgtgc
caaaaataccaaaagaaattggtcagctcttcagaatacgctaaaaaactcaatgcgatt
gacaagattaaaaacaccgaagaaaagcaaaaagttttagatgaagaattagaagacggc
tatgattttttgaaagaaaaggattttttagagtggagcaggagcgatagcccagtgcgc
atgtatttgcgtgaaatgggggatataaaacttttaagcaaagatgaagagattgaattg
agcaagcaaatccgcttgggtgaagacattattttagacgcgatttgctcggtgccgtat
ttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagggttaaa
gagcttttcaggagctttgatgatgacgatgaaaatagcgtgagcgattctaaaaaagat
gacgacagcgaagaagacgaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaagac
aagaagcgcgttgaaaaggtccaagagagttttaaagccctagacaaggctaaaaaagaa
tggcttaaagctcttgaagcccccatagatgaaaaagaagacgaattggtgcgtttattg
actctagcttacaaacgccaaacgctcaaagacagactctatgatttagagcctactagc
aaactgattaatgaattagtcaaaacgatggagaccactttaaaaagcggcgatgggttt
gaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgacaccctgatcgca
aaccataaaaaaatccttgctaatatcactaacatgactaaagaagacattatcgcccaa
gtgccagaagcgactatggtgagcgtgtatatggatctcaaaaaactctttttgactaaa
gaagcgagcgaagaaggctttgatttagcccctaacaagctaaaagaaattttagagcaa
atcaaaagagggaaattgatttccgatcgcgctaaaaacaaaatggctaaatccaattta
aggttggtagtgagcatcgctaaacgattcacgagcagaggcttacctttcttggatttg
attcaagagggcaatatcggcttgatgaaggcggtggataagtttgagcatgaaaagggc
ttcaagttttctacctatgcgacctggtggatcaagcaggctatcagcagagccatagcc
gatcaagcccgcaccatccgcatccccatccatatgattgacacgatcaatcgcatcaat
aaagtcatgcgcaaacacattcaagaaaccggcaaagagcctgatttggaagtggtggct
gaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttactaaagagcct
atcagtttggaaaccccagtcggcaatgatgatgacggcaaatttggggatttcgtggaa
gataaaaatatcgttagctccattgatcacatcatgcgcgaagatttgaaagcgcaaatt
gaaagcgttttggatcaattgaatgagcgagaaaaagcggtgatccgcatgcgttttggg
cttttagacgatgaaagcgatcgcactttagaagaaatcggcaaggaattgaatgttact
agagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagtccgcaatac
gggcgcattttgagaaactatttgcgcatttga
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