Helicobacter pylori ELS37: HPELS_06305
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Entry
HPELS_06305 CDS
T01798
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpe
Helicobacter pylori ELS37
Pathway
hpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPELS_06305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpe03019
]
HPELS_06305
03016 Transfer RNA biogenesis [BR:
hpe03016
]
HPELS_06305
Enzymes [BR:
hpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPELS_06305
Messenger RNA biogenesis [BR:
hpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPELS_06305
Transfer RNA biogenesis [BR:
hpe03016
]
Prokaryotic type
tRNA degradation factors
HPELS_06305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_RRP5
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFF20781
UniProt:
A0ABC7ZGN5
LinkDB
All DBs
Position
complement(1284336..1286402)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCTEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPLKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEETFTPYQNELLFKESEGIA
LNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVK
KTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKEAREHILKIMHEAKE
KIVINFSHLPTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELERYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQHMDR
CQVALKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaactctggtaacagaaccgaagaattcgctctcaaacaagtg
gccaaacaagccactagctctttaatgtatcgcttaggaaaaacccttattttagcgagc
gtgtgcacagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcgtatgcagccggtaaaatcccgggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggcttatagataggactttacgccctttattccct
aaagattaccgctaccctacgcaaatcactttaatggttttaagccatgatattgaaaac
gatttgcaagtttctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
ccccttaaaagcgtgagcgcttgcaggatcgctaggattgataacgaatttatcattaac
cctaacacaagccttttgaatcaatctagtttggatttgttcgtgtccggcacgaaagag
agtttgaacatgatagaaatgcgctctttggggcaaaaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacctgcacgctttat
gaagagacattcacaccctatcaaaacgaactcctttttaaagagagcgaagggatagcc
cttaatgaaaggctgttggatttattaaaaaatcagtattttgatgaaatcattaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgctaaaaaaatc
agcgaagcccactcagaattcagtttagaagaaattgaatggtctttagagaaggtgaaa
aaaaccgagatcagacgcatgattattcaagataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcacagctccatt
ttattcactagagggcaaactcaaagcttagtcgtaggggtcttaggaacggataatgac
gctcaaacccatgagagtttggagcataaaacccctatcaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctattggtgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcagggtctttagccctttatgcaagcggtgtggaaatttacgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgctattttgagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggctatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagcc
ttactccaagccaaagaagcgcgagaacatattttaaaaatcatgcatgaagcgaaagaa
aagatcgtgatcaatttttcccatttgcccacgactgaaatttttaatgtcgtgccagat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtggaaaagttt
gaggttaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgttttaaagactaaggaatttattttgaactacttgcattctttagatcaagaattg
gagcgatacgctattgatgaggtattagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggtgaaggcttgttgagaaaacaacacatggacagg
tgtcaagtggctttaaaagaaggcgatagtattcggtgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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