Halopseudomonas pelagia: EAO82_13985
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Entry
EAO82_13985 CDS
T07735
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hpeg
Halopseudomonas pelagia
Pathway
hpeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAO82_13985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpeg03019
]
EAO82_13985
03009 Ribosome biogenesis [BR:
hpeg03009
]
EAO82_13985
Enzymes [BR:
hpeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EAO82_13985
Messenger RNA biogenesis [BR:
hpeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAO82_13985
Ribosome biogenesis [BR:
hpeg03009
]
Prokaryotic type
rRNA processing factors
EAO82_13985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QFY57379
LinkDB
All DBs
Position
2980048..2983290
Genome browser
AA seq
1080 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSDRHGFLPLKEISREYFSKQPEGRVNIKEVLREGQEVIVQVDKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGDERNDLREAINSLNVPADMGMIVRTAGLGRSAEELQW
DLDYLLQLWGAIKGASTERPSPFLIYQESNVIIRAIRDYLRQDIGEVLIDSETVKEEALN
FISQVMPQYASKVKLYEDTVPLFNRFQIESQIETAFEREVKLPSGGSIVIDHTEALVSVD
INSSRATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
KESLEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGRGTIRDVESLSLSV
LRLIEEEALKERTAEVRAHVPIAVATFLLNEKRDALAKTEERTKVRLLILPSEHMETPHF
DVQRLRDDHESVLNGETSYTMSSDIVAEEPTPVSQTKAIVRQEAAVKTIAPSRPAPSPVA
AATQAIQEAQPGIFKGLIKSLVSLFATDEQPAEETKPAKSEARPAARDNKRNDERRNGRN
RRPRNERSDRPERAEKPERSERAEKPERAERPERKPQAPRNEPQAEKRDQQPAAAAAAID
SSASSEAPTTRRRRRAPSDASTDTRPVNQESNSAAPAERRPRRNEEKLENEEVDLDQVDQ
PVAEEGTEGDRPKRRSRNSQRRRNNRRSRVNQDETQSVDGEQSSQQNADQQSTVAAEQDA
QPSIQEGAAQSGSEPSKIAAAAVSATAALPEHDTEQQPIEASARADVSDISAPVEAGLTQ
AAVELEASIEHAVEAFSHSQPSEQQDEASIAESASEPSTASADTTDTPETTETLTPVIQS
VNETTTEPTKVETPVAESVQAEPEATVEAPVESAPEPVVEATPEPVAEPAPEPVPAVTES
GRAYNDPREIRRRQLEAKRLAEQAEASAPAQEAVTAPEPVAQPAVEQEAAAEPQQSTVET
DVADVQEPAPRANSMSEQAALAIEPEDTSTEDEKSAEAAQDESESESKADNADEDDKNPR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaacccgaagagttgcgcgtcgccctggtagat
ggccagcgcctgtacgatctggatattgaatccggagcccgtgaacagaagaaagccaac
atctataaaggccggatcacccgggtcgagcctagcctcgaagccgctttcgtcgacttc
ggttctgatcgtcacggctttctccccctcaaggaaatctcccgcgaatacttctccaag
cagcccgaaggccgcgtcaacatcaaggaagtactgcgcgaaggccaggaagtcattgtc
caggtagacaaggaagaacgtggcaacaagggcgccgccctgaccaccttcatcagtctg
gctggccgctacctggtgctgatgccaaacaacccccgtgccggtggtatctcccgccgc
atcgaaggcgatgagcgcaacgatctgcgcgaagccatcaacagcctgaacgtgcccgcc
gatatgggcatgatcgtgcgtactgccggcctgggccgcagcgccgaagaactgcaatgg
gatctggattacctgctgcaactctggggcgcgatcaaaggcgcctccaccgagcgcccc
tccccgttcctgatctatcaggaaagcaacgtgatcatccgtgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagtgaaacggtcaaggaagaagcactgaac
ttcatcagccaggtcatgccgcagtacgcgagcaaggtcaaactgtatgaagacactgtc
cctttgttcaaccgtttccagatcgaaagccagatcgaaaccgccttcgagcgcgaagtg
aaattgccctccggcggctccatcgtcatcgatcacacggaagctctggtatcagtcgac
atcaactcctcgcgcgccaccaagggtagcgatatcgaggaaactgcgttgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgatatcggtggcctgatc
gtcatcgactttatcgacatgaccccggcgaagaatcagcgcgccgttgaagaacgcgtc
aaggaaagcctcgaagccgaccgtgcccgtgttcaggttggccgcatctcgcgttttggc
ctgctggaaatgtcgcgtcagcgtctgcgtccgtccctgggtgaaaccagcggtatcgtc
tgcccacgctgtaacggtcgcggcaccatccgcgacgttgaatccctgtcgctctccgtg
ttgcgcctgattgaagaggaagcgctcaaggagcgtaccgctgaagtgcgcgcacacgtg
ccgatcgccgtggctaccttcctgctcaacgagaagcgtgatgcgctggccaagaccgaa
gagcgtaccaaggtccgcctgctgatcctgcccagcgaacacatggaaacgcctcacttt
gacgtacagcgcctgcgtgatgatcacgagtcggtcctgaacggcgaaaccagctacacc
atgagcagtgacatcgttgctgaagaaccaacgccagtcagccagaccaaagccattgtc
cgtcaggaagcagcggtcaagaccattgccccttcacgccctgcaccctccccggtagcc
gcagcaacccaggcaatccaggaagcccagccgggcatcttcaaaggtctgatcaagtcc
ctggtcagcctgtttgccaccgatgagcagcccgcggaagaaaccaagccggcgaagtcg
gaagctcgcccggctgcacgtgacaacaaacgcaacgatgagcgtcgcaatggccgcaac
cgtcgcccgcgcaacgagcgcagtgatcgcccagaacgcgctgaaaagcccgagcgcagc
gagcgggctgaaaagcctgaacgtgccgagcgccccgagcgcaagccgcaggcgccgcgt
aacgagccgcaggccgagaagcgtgatcagcagcctgctgccgccgccgcagcaatcgat
agcagcgcatctagcgaggcgccaaccacccgtcgccgtcgccgcgctcctagcgacgcc
agcactgacacgcgtccggtcaatcaggaaagcaacagcgccgcacctgctgaacgccgc
cctcgtcgaaacgaggagaagctggagaacgaagaggtcgatctggatcaggtagatcag
cccgttgccgaggaaggcactgagggcgatcgtccgaagcgtcgttcacgtaatagccag
cgccgccgtaacaatcgtcgcagccgtgtgaatcaggatgaaacccaaagcgtcgatggc
gagcagagcagccagcaaaatgctgaccagcagtccaccgtggctgccgagcaagatgcc
cagccgagtatccaggaaggtgcggcgcaatcaggctctgagccgagcaagattgctgca
gctgcagtgtctgcgaccgcagcattgcctgaacacgataccgagcaacagccaattgaa
gcctcggcccgcgctgacgtcagtgacatcagtgctccggttgaagccgggctgacacag
gctgccgttgagctggaagcgtctatcgagcatgccgttgaagccttcagccactcgcag
cccagcgagcagcaagacgaagcgagcatagcggaatctgcatccgagcccagcacagcg
tcagcggacaccaccgatacgccagagacgactgagactctgacgccggtcattcagtcc
gtaaacgaaaccactaccgagcctaccaaggtcgaaacacctgtcgctgagtcagtgcag
gccgagcctgaagcgaccgtggaagcacccgtcgaatctgcgccggaaccggtggtagaa
gcgacgcctgaaccggtcgccgagcctgctccggagccagttcctgcggtaacagaaagc
ggtcgtgcctataacgatcctcgggaaattcgccgccgccagctggaagccaagcgactt
gccgaacaggcagaagcatctgcgccagcgcaagaagctgtcacagcgccggagcccgtt
gcgcaaccggctgtcgagcaggaagcggcagcagagccacagcagtcgaccgtcgagact
gacgttgccgacgtgcaggagccagcgccgcgcgccaactccatgtccgaacaggctgcg
ttggccatcgagcctgaggacacgtctactgaagacgagaaatcggccgaagcagcgcag
gacgaaagcgaaagcgaaagcaaagctgacaacgctgacgaagacgacaagaaccctcgc
taa
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