Halopseudomonas pelagia: EAO82_17045
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Entry
EAO82_17045 CDS
T07735
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hpeg
Halopseudomonas pelagia
Brite
KEGG Orthology (KO) [BR:
hpeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpeg03019
]
EAO82_17045 (hrpB)
Enzymes [BR:
hpeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EAO82_17045 (hrpB)
Messenger RNA biogenesis [BR:
hpeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EAO82_17045 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
ResIII
AAA_30
AAA_16
AAA_19
AAA_22
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QFY57924
LinkDB
All DBs
Position
complement(3671305..3673839)
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AA seq
844 aa
AA seq
DB search
MTDLPVASVLDELDQALASHPCAVLQAPPGAGKTTLVPLALLNSAWLAGQKIILLEPRRL
AARAAAERLAQLLGEPVGQRVGYRIRLESRVSSATRIEVVTEGILQRLLQDDPELPGIGL
VIFDEFHERSLDADLGLALCRQTQQYLRDDPPLRLLVMSATLDAQAVSQLLDNAPMISSQ
GRQYPVDVRYMGTAEPRQPIEPRVVQTALQALADEGGSQLVFLPGMAEIRRVQTQLEAQL
THHKDVLVTPLYGELDLAAQRLAISPAPPGQRKIVLATSIAQTSLTIEGIRVVIDAGLIR
QPSFDPVSGLTRLQTRRVSQAAAEQRAGRAGRLEPGICYRLWSASQQEQMAAQDQPEMLQ
ADLAPLALQLAQWGIQEASELSWLDQPPTAALAQGRELLEMLGALRRDDAGWRLTEHGTA
MAALPMHPRLAHMLLRGQAMGLGLLACRLAAIAGERDLLRGVQDADLARRMALFDQPRAD
GSLDRGAMQRARQLAGQWQRLLERTPVNPVDNPEHEHWQGLLLAMAYPDRIAQRRAEGGE
YRLANGRSAAFAEADALQKHEWLVISALGGHAAQRNVRIFMAAALDASLVTRHVPELLTQ
KDTLEWDARSESLIAERQQRLGALIFSRKALPEMDPDARNRALCEVVRRQGLNLLPWSSA
LRQWQARVLLLRQLDLNQGGSSDWPDISDAALLDTLEVWLAPYLGKVRRLAHFANLDLPS
ILAGLLRWPLPRQLDEQAPSHWTVPTGSQIRIDYSETPPVLAVRLQEMFGSTDTPRIAQN
RQSLQLHLLSPAQRPVQITQDLAGFWQGSYAEVKKDMKGRYPKHYWPDDPLQAEPTRRAK
PRKS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttacctgtagccagcgtactggacgagcttgatcaggcgctggccagccac
ccttgcgccgtgctgcaggcaccgcccggcgccggcaaaaccacgctggtgccgttggcg
ctgttgaacagtgcctggctggcagggcagaagatcatcctgcttgaaccgcgccggttg
gctgcgcgggcggcggccgagcgtctggcccaactgctgggtgagccggtcgggcaacgg
gttggttatcgcattcggctggaaagccgggtcagttctgccacgcgtatcgaagtagtc
acggaggggatcctgcagcgcttgttgcaggacgaccccgagttgccaggcatcggcctg
gtgatcttcgatgaatttcatgagcgcagtctggacgccgatctggggttggcgctgtgt
cggcagacgcaacaatacctgcgtgatgatccgccgctgcggttgctggtgatgtctgcc
acgctggacgcacaggcggtcagccagctactggataacgcgcccatgatcagcagccag
ggtcggcagtatccggtggatgtgcgttatatgggtacggctgagccgcggcaaccaata
gagccgagagtggtacaaaccgcactgcaggcgctggccgatgaaggtggtagtcagctt
gtcttcctgccggggatggcggaaatccgccgggtccagactcagcttgaggcgcagctc
acgcaccacaaggatgtgctggtcacgccgctttatggtgaactggaccttgctgctcag
cgcctggccatcagcccggcgccgcctgggcaacgcaagattgtgctggccacttccata
gcgcaaacctcgctgactatcgagggcatacgagtggtcatcgatgcgggcttgatacgc
cagccatctttcgatccggtgtccggcctgacgcgcctgcagacccgccgagtttcccag
gctgctgccgagcaacgcgcgggccgcgccgggcgcctggaacccggtatatgttatcgg
ctctggtcagccagccagcaggaacagatggcggcgcaggatcagccggaaatgctccag
gccgatcttgcgcccctggcgttgcaattggcgcagtgggggatccaggaggcgagtgaa
ctcagctggcttgaccagccgccgacggcagccttggctcagggtcgcgaactgctggag
atgctgggcgcattgcggcgcgacgatgctgggtggcgactgaccgagcatggcacggcc
atggcggccttacccatgcacccccgtctggcgcatatgctgttgcgcggtcaggcgatg
gggctggggctgctggcttgccgcctggccgccatcgccggcgaacgagatctgttgcgt
ggggtgcaggatgccgacctggccaggcgcatggcactgttcgatcaacccagggctgac
ggttcgctagaccgcggagcgatgcagcgcgcacgtcagttggccgggcaatggcagcgt
ctgttggagagaacgccagtgaacccggtggataaccccgagcatgagcactggcagggg
ctgttgctggccatggcctatccggatcgtattgcccagcggcgggccgagggcggggag
taccggctggccaatgggcgctcggcggcctttgccgaggccgatgcgttgcaaaagcat
gagtggctggtgatctcggctttgggcggccatgcggcgcaacgcaatgtcagaatcttt
atggctgccgctctggatgcgtctttagtgacaaggcatgtgcctgaactgctgacccag
aaggatacgttggagtgggatgcgcgcagcgaaagtttgatcgccgagcgtcagcagcgc
ctgggggcgttgatttttagccgcaaggccctgccggagatggatcccgatgcacgcaac
cgcgcgctctgcgaggtggtgcgcaggcagggtttgaatctgctgccctggtcgtcagca
ttacgccagtggcaggcacgggtacttctgctgcgtcagctggatttgaaccagggcggc
agcagtgactggccggatattagcgacgcggctttgctcgatacgctggaagtctggctg
gcgccctatctgggcaaggtcaggcgcctggcgcactttgccaatctggatttgccatca
atcctggctgggcttttgcgctggccgctgccgcgtcagcttgacgagcaggcccccagc
cactggactgtacccaccggatcgcaaatccgtatcgattacagcgaaacgccgccggtt
ctggcggtgcggttgcaggagatgttcggcagtaccgacacgccgcggatcgcgcagaat
cgccagtcgctgcaactgcatctgttgtcacctgctcagcgtccggtgcaaatcacccag
gatttggccggcttctggcagggcagttatgccgaggttaaaaaggacatgaagggccgt
tacccgaaacactactggcccgatgatccgctgcaggcggagcctacgcgtcgggcgaag
ccgcgcaagagctga
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