Halosimplex pelagicum: HZS54_07025
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Entry
HZS54_07025 CDS
T06697
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hpel
Halosimplex pelagicum
Brite
KEGG Orthology (KO) [BR:
hpel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpel03016
]
HZS54_07025
Enzymes [BR:
hpel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HZS54_07025
Transfer RNA biogenesis [BR:
hpel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HZS54_07025
Prokaryotic type
tRNA splicing ligases
HZS54_07025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLH81393
UniProt:
A0A7D5TAF1
LinkDB
All DBs
Position
1415086..1416525
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AA seq
479 aa
AA seq
DB search
MTIELDGEHTTARVLVEDESLVEDNCLAQIQELVDHPAFTEPVRVMPDTHWGAGAPIGFT
MPLPDRVVPNIVGVDVGCGMALTNLGEELPLSDAEREQRVREAVPMGRSVHDYDDSVHLV
DEFPFERANEVFESFDAAVRERFDRPVDPVEFDFDGYDGEYFKSLCDRVLTGRAGMGHVI
RSAGSLGGGNHFVEFARARESGEYWLVIHSGSRYLGKAVAEFWQARATEQRDAEAIRSSI
PEEYAEYVKFDPDSVSDDDLQAWVTGGMGESHLRKDRIRAEFAEDRIDEVFEALAKPGDG
DRNEALDWLEGREADGYYVDMLFAQQYARWNRELMSDAICEALGVDPVERFQAIHNYVDF
RDLTIRKGATPAREGQRLVIPFNMAEGSLLARGKGNEAYYRTAPHGAGRAMGRREAHEEL
SLDAFETAMDGVYSESVVDDTLDEAPMAYKSAEAIAEAVEPTAEVVDWLEPVHNLKALE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgacgatagagctggatggcgagcacacgaccgctcgcgtgctggtcgaagacgaatcg
ctcgtcgaggacaactgcctggcgcagatccaggaactggtcgaccacccggcgttcacc
gagcccgtccgcgtgatgcccgacacccactggggcgccggcgcgcccatcgggttcacg
atgccgctccccgaccgggtcgtcccgaacatcgtcggcgtcgacgtgggctgtggcatg
gcattgacgaacctcggcgaggaactcccgctgtccgacgccgaacgcgagcagcgggtc
cgcgaggcagtcccgatggggcggtcggtccacgactacgacgactcggttcacctcgtc
gacgagtttcccttcgagcgggcaaacgaggtattcgagtcgttcgacgcagccgtccgc
gagcgcttcgaccggccggtcgaccccgtcgagttcgacttcgacggctacgacggcgag
tacttcaaatcgctgtgcgaccgcgtgctgaccggtcgcgcggggatgggccacgtcatc
cggagcgcgggcagtcttggagggggtaaccacttcgtcgaatttgcccgcgctcgcgag
tcgggcgagtactggctggtcatacacagcgggtcgcgctacctcggcaaggccgtcgcc
gagttctggcaggcccgcgccaccgaacagcgcgatgccgaggccatccgctcgtcgatc
cccgaggagtacgccgagtacgtgaagttcgaccccgactcggtctccgacgacgacctc
caggcgtgggtgacgggcggcatgggcgagtcccacctccgcaaggaccgcatccgcgcg
gagttcgctgaggaccgcatcgacgaggtgttcgaagcgctcgccaagcccggcgacggc
gaccgcaacgaggcgctcgactggctggagggtcgcgaggccgacggctactacgtcgac
atgctgttcgcccagcagtacgcccgctggaaccgcgagctgatgagcgacgctatctgc
gaggcgctcggcgtcgacccggtcgagcgcttccaggcgatccacaactacgtggacttc
cgcgacctgacgatccggaagggcgcgacgcccgctcgcgagggccagcggctcgtgatc
ccgttcaacatggcggaggggtcgctgctcgcccgcgggaagggcaacgaggcctactac
cgcacggcaccccacggcgccggtcgcgcgatgggtcgacgcgaggcccacgaggaactc
tcgctcgatgccttcgagacggcgatggacggcgtctactccgaatccgtcgtcgacgac
accctcgacgaggcgccgatggcctacaagtcggccgaagcgatcgcggaagccgtcgag
ccgaccgccgaggtcgtcgactggctggagcccgttcacaacctgaaggcgctggagtga
DBGET
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