Halosimplex pelagicum: HZS54_15110
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Entry
HZS54_15110 CDS
T06697
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hpel
Halosimplex pelagicum
Pathway
hpel03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hpel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HZS54_15110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpel03021
]
HZS54_15110
Transcription machinery [BR:
hpel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HZS54_15110
Prokaryotic type
Archaeal type
TFB
HZS54_15110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Sigma70_r4
Cas12f1-like_TNB
DUF7129
HTH_Tnp_ISL3
DZR
Cyclin_N
DUF7575
BRF2-like_C_cyclin_rpt
Zn_ribbon_Nudix
HTH_24
A2L_zn_ribbon
Zn_ribbon_LysW
Zn_ribbon_tTFIIB
TrmB
Trm112p
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QLH82872
UniProt:
A0A7D5TU26
LinkDB
All DBs
Position
complement(3021240..3022220)
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AA seq
326 aa
AA seq
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MSDTTIRTGAEEQASERLREEQEESTSEREQECPECGGRVDADTEHGETVCSECGLVVDE
DEIDRGPEWRAFNPSEKDEKSRVGAPTTNMMHDKGLSTNIGWQNKDAYGNSLSSNQRQKM
QRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPKTVRETASVIYRRALEENLLPGR
SIEGVATSALYAAARQANTPRSLDEMTAVSRVEKMELTRTYRYVVRELNLEIKPADPESY
LPRFVSDLALSDDTERRARELIESARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEV
SEVANISEVTIRNRYKELLESVDAPA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgacaattcgaaccggcgccgaggaacaggcgagcgaacggctgcgagag
gagcaggaggagtcgacgagcgagcgcgaacaggagtgcccggagtgcggcggtcgggtc
gacgcggacaccgagcacggcgagaccgtctgttcggagtgtggactggtcgtcgacgag
gacgagatcgaccgcgggcccgagtggcgcgcgttcaacccctcagagaaggacgagaag
tcccgcgtcggcgcgccgacgacgaacatgatgcacgacaagggcctctcgaccaacatc
ggctggcagaacaaggacgcatacggcaactcgctgtcgtcgaaccagcgccagaagatg
cagcggctgcgcacctggaacgagcggttccgaacccgcgactcgaaggagcgcaacctc
aagcaggccctgggcgagatcgaccgcatggcgagcgcgctgggcctcccgaagacggtc
cgggagactgccagtgtcatctaccgccgcgcgctggaggagaacctcctgcccggccgc
tccatcgagggcgtggccacgtcggcgctgtacgccgccgcccgccaggccaacacgccg
cgcagcctcgacgagatgacggccgtctcccgcgtcgagaagatggagctcacgcggacg
taccgctacgtcgtccgcgagctgaacctggagatcaagccggccgaccccgagagctac
ctcccgcggttcgtctcggacctcgcgctcagcgacgacaccgagcgccgggcgcgcgag
ctcatcgagagcgcgcgcgaccaggggatcctcagcgggaagagcccggtcggcctcgcc
gccgccgcggtgtacgccgccgccctgctgaccaacgagaaggtcacccagagcgaggtc
agcgaggtggccaacatctccgaggtcaccattcgaaatcgctacaaggaactcctcgaa
tccgtcgacgccccggcctga
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