Helicobacter pylori F30: HPF30_0428
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Entry
HPF30_0428 CDS
T01895
Symbol
rep
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03420
Nucleotide excision repair
hpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPF30_0428 (rep)
03430 Mismatch repair
HPF30_0428 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpf03400
]
HPF30_0428 (rep)
Enzymes [BR:
hpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPF30_0428 (rep)
DNA repair and recombination proteins [BR:
hpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPF30_0428 (rep)
MMR (mismatch excision repair)
Other MMR factors
HPF30_0428 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_12
AAA_30
ResIII
DGKD_4H
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAJ56525
LinkDB
All DBs
Position
complement(458815..460845)
Genome browser
AA seq
676 aa
AA seq
DB search
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
ALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHTPYATFYENILDEFENTK
KKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYD
QSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKSLEV
VKSGHFNKPALLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSYNVP
SKRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSYISDIGSNTAKDIHEALMLLG
NGDLKLALIEPDKEAKIYTKKKEITSMGLFKEIFALENSSRFNSVIDKAFHSHPVLMHPK
ISLNGAKMLSDFFILYTKAPTHSPSALIKHILESAFFQTSKTRLLKERSKNKDGSYNEFK
KLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKD
VYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHK
PSVFLYEAGLLKPDLK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccccgagcaactcaaagcggccaaggctttgaaaggg
tataatttagtgattgcgagcgctggcacaggaaagacttctacgattgtggggcgcatt
ttatacctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgctagggtggctaaatattccaaatcaagctccaaaatt
gaagcgggcactttccatgcggtggcgtatcgctatttaaaagagcattaccctaattta
agcctgaagcaacctaaagaattgaaaaaacttttagaaagcattgtggatactaaaaac
gcgctaacagacgacgataaaaagccctacacttcacagcatctctacgccctctattct
ctttataccaacgctctaaaacaagaagattttagcgcatggctttctcataaaaaccct
gaacacacgccatacgccaccttttatgaaaacattttagacgaatttgaaaacaccaaa
aaaaagcataattatattgactataacgacttgctgctgttatttaaacaagcgatgcta
gaaagacctagcccttataaagaagtgctttgcgatgaatttcaagacactaacccctta
caagaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgat
cagagcatttacgcttttaatggagcggatatttctatcatttctaatttcactcaaaaa
tacaaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagagatttta
gatctcgctaatcaagtgatacagcataatgagcgcatttaccctaaaagtttagaagtg
gtgaaatcagggcatttcaataagcccgcacttttaaattacaacgataatatcgcgcaa
tgccaagacatcgctaaacgcattgtcatgcgaaagaattttaaagaagtggcagtgatt
tttaggaataacgcgagcgcggatcaattagaagccgctttaagatcttacaatgtgcca
agcaaaaggaaagggagcgcgagctttttcgaatccaaagaagtagcgttagcgttagac
atttgcgcgctcatctttaaccctaaagacattatggcagcaattcatgttttaagctat
atcagcgatattggctctaacaccgctaaagacattcatgaggccttaatgcttttaggc
aatggtgatctcaaattggctttaattgagcctgataaagaagctaaaatttacacgaag
aaaaaagaaatcacctctatggggctttttaaagaaatttttgccctagaaaacagctca
aggtttaatagcgtgatagataaagcgttccattcgcacccggtgttgatgcaccctaaa
atttcactcaatggggctaaaatgcttagcgattttttcattctttataccaaagcccct
acccattcccctagcgctttaatcaaacacattttagaaagcgcgttttttcaaacctct
aaaacacgccttttaaaagagcgctccaaaaataaggacggctcttataacgagtttaaa
aaactccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttggcgaaa
aattaccagaatttagggcgttttttaaacggcactttaataggctctagtgaagccacg
caaggcgagggcgtgaatttattgagcgtgcatgcttctaaaggcttagaatttaaagat
gtttatattatagatttaatggagggccgtttccctaaccacaagctcatgaataccggt
ggaggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaat
ttatggctttcttatgcgaaaaacgaattgagagaaaacgccaaacctaaagagcataaa
ccctcggtgtttttgtatgaagcggggcttttgaaacctgatttaaaataa
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