Helicobacter pylori F30: HPF30_0573
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Entry
HPF30_0573 CDS
T01895
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF30_0573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpf03019
]
HPF30_0573
Messenger RNA biogenesis [BR:
hpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPF30_0573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
UPF0242
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
BAJ56670
LinkDB
All DBs
Position
607643..609232
Genome browser
AA seq
529 aa
AA seq
DB search
MSMGLIYISLEVLVACLITALAMYYVMKKIYYARGQAVLKSASAKAKLMEFQAKSFVEAE
EMRMKSQECKLQQQYENKNLQLQTHFEKKEAYLKHLEVQHKEFVRDEKRYLEKEKKELEK
ERQILEQEKENFKKQRAVCKEAQAKALDAMLNYMAYTKDEIKNMILEQLEEELEAQKSAL
IKRYEKEAKEEGKKKSYAILAEATARFAGNYAAENLTTRIALPCSDYVGRVIGKDGKNIE
AFKKVSGVDIEFSEDSSELCLSSFNLYRREVASETLKILIEDGRIQPNRIEEVYHRVARN
MEKELLSEGESVVLELELGAMEDELKILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQL
GGDKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMS
VECASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIV
KSNQVRDNQVPIIARKIAKKIEESTQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgggattaatttacatttcattagaagtcttggtagcgtgtttgattaccgct
ctagccatgtattatgtgatgaaaaagatctattacgctagagggcaagccgttttaaaa
agtgcttcagctaaagccaaattaatggagtttcaagcgaaatcttttgtggaagctgaa
gagatgcgtatgaaaagccaagaatgcaaattgcaacagcaatatgaaaacaagaatttg
caactccaaacccattttgaaaaaaaagaagcatatttgaagcatttagaagtgcaacac
aaagaatttgtaagggatgaaaaacgctatttagaaaaagaaaaaaaagagcttgaaaaa
gaacgccaaattttagagcaagaaaaagaaaattttaaaaaacagcgcgctgtttgtaaa
gaagctcaagccaaagcgctagatgcgatgctcaattatatggcttataccaaagatgaa
attaaaaacatgattttagagcaattagaagaagaattagaagcgcaaaaaagcgcgtta
atcaagcgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccatttta
gcggaagcgacagcccgttttgcgggtaattatgcggcagagaatttaacaactcgcatt
gctttgccttgctcagattatgtcggtcgtgtgataggcaaagacgggaaaaatattgaa
gcgtttaaaaaagtcagtggggtggatatagaatttagcgaagatagcagcgaattgtgt
ttgtccagtttcaatctttatcggcgtgaagtagcgagcgagacgcttaaaattttaata
gaagacggccgtatccaacctaataggattgaagaggtctatcatagagtcgcgcgcaac
atggaaaaagaattgctttctgaaggggagagcgtggtgctagaattagagcttggggct
atggaagatgagcttaaaattttaataggcaaaatgcgttatcgctccagttttgggcaa
aacgccttacagcattctaaagaagtcgctcttttagccggcttgattgcagagcagctt
gggggggataaaaagctcgccagaagagccggtattttgcatgatattggtaaagcgctc
acccaagagcttgggagagatcatgtgaatttaggggttgaagtgtgcaagcgccataaa
gaagacccggttgtgattaatgcgatttatgcccaccatgggcatgaagaaatcatgagc
gtagagtgcgcgagcgtgtgtgcggctgatgcgctttcagcagggcgtccgggggctaga
agaaagagtgatgaagaatacgctaaacgcatgcaagctttagaagagatcgctctagaa
tttgatggggtggaaaaagcgtatgcgatggagagcgggcgagaattaagagtgattgtc
aaatccaaccaggttagggacaatcaagtgcctattattgccagaaagatcgctaaaaag
atagaagagagcactcagtatgtgggcgaagtgggcgtgcaggtggtgcgagaaagccgt
ttcaaaacgaccgctacgctcaagcaataa
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