Helicobacter pylori F30: HPF30_0950
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Entry
HPF30_0950 CDS
T01895
Symbol
recJ
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03410
Base excision repair
hpf03430
Mismatch repair
hpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPF30_0950 (recJ)
03430 Mismatch repair
HPF30_0950 (recJ)
03440 Homologous recombination
HPF30_0950 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpf03400
]
HPF30_0950 (recJ)
DNA repair and recombination proteins [BR:
hpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPF30_0950 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPF30_0950 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPF30_0950 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
BAJ57047
LinkDB
All DBs
Position
1026702..1028252
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AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYKEKGFPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKTLYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMERKMIQQQVF
EEAFKHAMIGEKIIVAFKDDWHESVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataaggaa
aaagggtttcctagcccctttttatttaaagatttgaaaaaagccgcactcaaaatcata
gaagccatgcacgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
atcagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagtgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaagagccattctagcgagttgttgtgcttggcgggcgtggcaactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaaaccttgtattttttgcaa
aaagaatctttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttctttcagtatcgctcccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatggagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatgattggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagagcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcttggtttttacctttaaagaaggggtgtataaagggagtgggcgtagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaactttg
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaggcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaagttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgagcgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag
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