KEGG   Helicobacter pylori F30: HPF30_0950
Entry
HPF30_0950        CDS       T01895                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpf  Helicobacter pylori F30
Pathway
hpf03410  Base excision repair
hpf03430  Mismatch repair
hpf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPF30_0950 (recJ)
   03430 Mismatch repair
    HPF30_0950 (recJ)
   03440 Homologous recombination
    HPF30_0950 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpf03400]
    HPF30_0950 (recJ)
DNA repair and recombination proteins [BR:hpf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPF30_0950 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPF30_0950 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPF30_0950 (recJ)
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 GLUCM-like_C Fe-S_biosyn
Other DBs
NCBI-ProteinID: BAJ57047
LinkDB
Position
1026702..1028252
AA seq 516 aa
MKQKLKAQIKERVASIAYKEKGFPSPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKTLYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMERKMIQQQVF
EEAFKHAMIGEKIIVAFKDDWHESVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataaggaa
aaagggtttcctagcccctttttatttaaagatttgaaaaaagccgcactcaaaatcata
gaagccatgcacgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
atcagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagtgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaagagccattctagcgagttgttgtgcttggcgggcgtggcaactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaaaccttgtattttttgcaa
aaagaatctttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttctttcagtatcgctcccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatggagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatgattggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagagcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcttggtttttacctttaaagaaggggtgtataaagggagtgggcgtagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaactttg
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaggcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaagttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgagcgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag

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