Helicobacter pylori F30: HPF30_1048
Help
Entry
HPF30_1048 CDS
T01895
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF30_1048 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpf03019
]
HPF30_1048 (deaD)
03009 Ribosome biogenesis [BR:
hpf03009
]
HPF30_1048 (deaD)
Enzymes [BR:
hpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPF30_1048 (deaD)
Messenger RNA biogenesis [BR:
hpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPF30_1048 (deaD)
Ribosome biogenesis [BR:
hpf03009
]
Prokaryotic type
rRNA helicases
HPF30_1048 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
BAJ57145
LinkDB
All DBs
Position
complement(1117339..1118817)
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQEPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQHEQTRSFKKGQHKDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaagaaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcctattatcaac
aaccttaaaaacaaccacaccatagaggctttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgttggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgatgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagacattagcggtgtgagtcatgtgttcaattaccacttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaaccagatcatcaaaaccttacatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttaccgaaatctttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagtaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacctctaacaaaaaa
acgcaccagcatgagcaaacgcgttctttcaaaaagggtcagcacaaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
DBGET
integrated database retrieval system
