Helicobacter pylori F30: HPF30_1296
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Entry
HPF30_1296 CDS
T01895
Name
(GenBank) conserved hypothetical ATP-binding protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF30_1296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpf03019
]
HPF30_1296
Messenger RNA biogenesis [BR:
hpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPF30_1296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
BAJ57393
LinkDB
All DBs
Position
complement(1378135..1380210)
Genome browser
AA seq
691 aa
AA seq
DB search
MTDNNHYENNENSSENPKAHHEAQAGAFERFTNRKKRFRENAQKNAESSNHEALSHHKKE
RHPNKKPNHHHKTKHTPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEA
NNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDVGMSFPKEG
LFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGS
KFDEHGLKRYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDF
KIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQG
RVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANE
VAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAV
LNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAI
SCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASA
GVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQAGLELLLKSSNAEILNNPK
KLEDHTRNFIRKALFKKFRKYPAIICHVHAN
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccattatgaaaacaatgaaaacagcagtgaaaacccaaaagctcat
catgaggcgcaagccggagcgtttgagcgattcaccaaccgcaaaaagcgttttagagaa
aacgcgcaaaaaaacgcagagtcttcaaaccatgaagcgctttcgcaccataaaaaagag
cgccaccccaacaaaaaaccaaaccaccaccacaaaactaaacacacaccccaaaagact
agaaattacgcccaagaagaattggatagcaataaagtagaaggcgttacggaaattttg
catgtgaatgagagagggactttaggctttcataaggagctcaaaaagggcgttgaagcg
aacaacaagatccaggtggagcatttaaacccgcattataagatgaatctaaactctaaa
gcgagcgttaaaatcacgcctttagggggcttgggcgagattggggggaacatgatggtc
attgaaaccccaaaaagcgcgatcgtgattgatgtgggcatgagcttccctaaagagggg
ctatttggcgtggatattttaatcccggatttttcctacttgcaccagatcaaggacaaa
atcgctggcattatcatcacccatgcccatgaagatcacataggggccacgccttatttg
tttaaagagttgcaattccccctttatggcacgcccttgagtttggggttgatcgggagc
aagtttgatgaacatggtttgaaaagataccgctcgtattttaaaatcgtagaaaagcgc
tgccctattagcgtgggcgaatttatcattgaatggatccacatcacgcattctattatt
gacagcagcgctttagcgatccaaactaaagccggaaccatcatccacaccggcgatttt
aaaatcgatcacaccccagtggataatctgcccactgatttgtatcgtttggcgcactat
ggcgaaaagggggtgatgcttcttttaagcgattccactaactcccataaatccgggact
acaccgagtgaaagcaccatagcgccggcttttgatacgctttttaaagaagcacaaggg
agggtgattatgagcacattctctagcaatatccaccgggtgtatcaagccatacaatat
ggcattaaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaaaacctagac
atcgctagagaattaggctatatccatttgccttatcaatcttttattgaagccaatgaa
gtcgctaaatacccggataatgaaatcttaatcgtaacgaccggctcacaaggcgaaacc
atgagcgcgctttatcgcatggcgactgatgagcaccgccacatttctatcaaacccaac
gatttagtcatcatctccgctaaagccattcctggcaatgaagcgagcgtttcagcggta
ttgaattttttaatcaaaaaagaagctaaagtggcttatcaagaatttgacaatatccat
gtgagcgggcatgccgcccaagaagagcaaaagctcatgttaagactcattaagcctaag
tttttcttacccgtgcatggggagtataaccatgtcgcgcgccacaagcaaaccgctatt
tcttgcggggtgcctgaaaaaaatatctatttaatggaagatggcgatcaggtggaagtt
ggccctgcgttcattaaaaaagtaggcacgattaaaagcggtaaaagctatgtggataac
caaagcaatttgagtattgatacaagcattgtgcaacaaagagaagaagtcgctagtgct
ggggtgtttgtcgctacgatttttgtgaataaaaacaaacaagcgcttttagaaagctct
caattttctagtttggggcttgtgggctttaaagatgaaaagcatttgattaaagaaatt
caagcgggattggagttgttactaaaatccagcaacgccgaaattttgaataaccctaag
aaattagaagatcatacccgtaatttcatcagaaaagcgctctttaaaaagtttagaaaa
tacccggctatcatttgtcatgtccatgccaactga
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