Helicobacter pylori Lithuania75: HPLT_07075
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Entry
HPLT_07075 CDS
T01896
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hph
Helicobacter pylori Lithuania75
Pathway
hph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPLT_07075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hph03019
]
HPLT_07075
Messenger RNA biogenesis [BR:
hph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPLT_07075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ADU83802
LinkDB
All DBs
Position
complement(1401821..1403890)
Genome browser
AA seq
689 aa
AA seq
DB search
MTDNNQNNENHENSSENSKADEARAGAFERFTNRKKRFRENAQKNAESSNHEVPSHHKKE
HRPNKKPNNHHKQKHAKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANN
KIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLF
GVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKI
DHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRV
IMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVA
KYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISC
GVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGV
FAATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLEVLLKSSNAETLNNPKKL
EDHTRNFIRKALFKKFRKYPAIICHVHAT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccaaaacaatgaaaaccatgaaaacagcagtgaaaattcaaaagct
gatgaggcacgagccggagcgtttgagcgcttcaccaaccgcaaaaagcgtttcagagaa
aacgcgcaaaagaacgcagagtcttcaaaccatgaagtgccttcgcaccataaaaaagag
catcgccccaacaaaaagccaaacaaccaccacaaacaaaaacatgccaaaacacgaaat
tacgccaaagaagaattggataacaacaaagtagagggcgttacggaaattttgcatgtg
aatgagagggggactttaggctttcataaggagttaaaaaagggcgttgaagcgaataac
aagatccaagtggagcatttaaacccgcattataagatgaatttaaactctaaagcgagc
gttaaaatcacgcctttagggggcttgggcgagattggggggaacatgatggtcattgaa
accccaaaaagtgcgatcgtgattgatgcgggcatgagcttccctaaagaagggcttttt
ggcgtggatattttaatcccggatttttcctatttgcaccaaatcaaggacaaaatcgcc
ggtattatcatcacccatgcccatgaagatcacataggggccacgccttatttgtttaaa
gagctgcaattccccctttatggaacgcccttgagtttagggctgattgggagcaagttt
gacgaacatggtttgaaaaaataccgctcgtattttaaaatcgtagaaaagcgttgcccc
attagcgtgggcgaatttatcattgaatggatccacatcacgcattctatcattgacagc
agcgctttagcgatccaaactaaagccggaaccatcatccacaccggcgattttaaaatc
gatcacaccccggtggataatttgcccacggatttgtatcgtttagcgcactatggcgaa
aagggcgtgatgcttcttttaagcgattccactaactcccataaatccggaaccacgccg
agtgaaagcaccatagcaccggcttttgataccctttttaaagaagcgcaagggagggtg
attatgagcaccttctctagcaatatccaccgggtgtatcaagccatacaatacggcatt
aaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaaaacctagacattgcc
agagaattaggctatatccatttgccttatcaatcttttattgaagccaatgaagtcgct
aaatacccggacaatgaagtcttaatcgtaacgaccggttcacaaggcgaaaccatgagc
gcgctttatcgcatggcgactgatgaacaccgccacatttctatcaaacccaacgattta
gtcatcatctccgctaaagccattcctggcaatgaagcgagcgtttcagcggtattgaat
ttcttgatcaaaaaagaagctaaagtggcttatcaagaatttgacaatatccatgtgagc
gggcatgccgcccaagaagagcaaaagctcatgttaagactcattaagcctaagtttttc
ttacccgtgcatggggagtataaccatgttgcgcgccacaagcaaaccgctatttcttgt
ggggtgcctgaaaaaaatatctatttaatggaagatggcgatcaagtggaagttggccct
gcgttcatcaaaaaagtaggcaccattaaaagcggtaaaagctatgtggataaccaaagc
aatttgagtattgacacaagcatcgtgcaacaaagagaagaagtcgctagcgctggggtg
tttgccgctacgatttttgtgaataaaaacaagcaagcgcttttagaaagctctcaattt
tccagtttagggcttgtgggctttaaagatgaaaagcctttgatgaaagaaattcaaggg
ggcttagaggtgttattaaaatccagcaacgccgaaactttgaataaccctaaaaaatta
gaagatcacactcgtaatttcatcagaaaagcgctctttaaaaagtttagaaaatacccg
gctattatttgtcatgtccatgctacctga
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