Halomonas sp. H5: ACQ1W9_17195
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Entry
ACQ1W9_17195 CDS
T11362
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hphz Halomonas sp. H5
Pathway
hphz03030
DNA replication
hphz03430
Mismatch repair
hphz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hphz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACQ1W9_17195 (dnaE)
03430 Mismatch repair
ACQ1W9_17195 (dnaE)
03440 Homologous recombination
ACQ1W9_17195 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hphz03032
]
ACQ1W9_17195 (dnaE)
03400 DNA repair and recombination proteins [BR:
hphz03400
]
ACQ1W9_17195 (dnaE)
Enzymes [BR:
hphz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACQ1W9_17195 (dnaE)
DNA replication proteins [BR:
hphz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACQ1W9_17195 (dnaE)
DNA repair and recombination proteins [BR:
hphz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACQ1W9_17195 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
OB_POT1A
Motif
Other DBs
NCBI-ProteinID:
XUK17907
LinkDB
All DBs
Position
complement(3729115..3732618)
Genome browser
AA seq
1167 aa
AA seq
DB search
MSPSFVHLRVHTEYSLVDGLVRLKPLISRSAEMGMPALAISDETNLFGLVKAYKSAQGAG
LKPIIGADFWLHNDYDEAHPYRLTLLAMNAEGYRNLTELISRGWMEGQRLGQPILHKAWI
FAQSEGLVALSGGRDGEIGRHLLSDHPDEARTLLAEWGQHFPGRFYLELTRTGRQYEEEC
LHLSVELGAETGTPVVATNDVRFIDKDDFWAHETRVAIGEGKALDDPRRERRYSEEQYLK
SPAEMAELFADIPEALENSLMIAARCNVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHDGL
TERLDFLYPADKYPRDGAEYAEIDARYRKRLDFELDIIIQMGFPGYFLIVMDFIQWAKDN
DVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IDYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFLDNDEEAAEIWEMARKLEGITRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
NGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRAAAGEGSLNIDAIPLDDA
PTFEMLKRAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGPLQSGMVDDFINR
KHGRAEISYPHPDYQHEWLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRRAMGK
KKPEEMAKQRVGFMEGCAANGIEKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLRLTVTPPDVNVGTYKFTVDTQARVVYG
LGAIRGVGEGPIGAIVEAREAEGPFQDLFDFCRRVDPKRMNKRTLEALIRSGALDNLGPN
RAVLAAALDDALKAAAQTQTNQNLGMMDMFGEAFADEAEGGDVYADYRGVREWTDKERLG
GEKETLGLYLTGHPIDEYEQELKRFVATRIADLRPSREPQRIAGLVVGVRTMKSKRGDTM
AFLTLDDRTGRIEASLFGELYDQLRGQIEADQVLIIEGEVSSDDYSGGLRLRGKEVTPMV
TARTRYAQAVELRIDGQRANGRLIRSLEASLEPYRSAEGLPVRLHYRNERAGGWLELAEV
WRVAPSDDLLIALREVEGQDGVGLSYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagcttcgtccacctccgcgtacacaccgaatactccctggtcgacggcctg
gtgcgcctcaagccgctgatctcgcggagcgccgagatgggcatgccggccctggccatc
agcgacgagaccaacctcttcggcctggtcaaggcctacaagtcggcccagggcgcgggc
ctcaagccgatcatcggcgccgacttctggctgcataacgattacgacgaggcccacccc
taccgcctgaccctgctggccatgaacgccgagggctatcgcaacctcaccgagctgatc
tcccggggctggatggaaggccagcggctggggcagccgatcctgcacaaggcctggatc
ttcgcccagagcgagggactggtcgcgctgtccggggggcgtgacggggagatcggccgc
cacctgcttagcgatcacccggacgaggctcgcaccctgctggccgagtggggccagcac
ttcccggggcgcttctacctggagctgacccgcaccggccgccagtacgaggaggagtgc
ctgcatctctcggtggagctcggtgccgagaccggcaccccggtggtggccaccaacgac
gtgcgctttatcgacaaggacgacttctgggcccacgagacccgggtggccatcggcgag
ggcaaggccctggacgatccgcgccgcgagcgccgctatagcgaggagcagtacctcaag
agcccggcggagatggccgagctcttcgcggacattcccgaggccctcgagaatagcctg
atgatcgccgcccgctgcaacgtcgacgtgcgcctgggcgagatctttttgccggagttc
gagatccccgagggcatgacccaggacgagttcttccgcaaggtctcccacgacggcctg
accgagcgcctggacttcctctatcccgccgacaagtacccccgcgacggcgccgagtat
gccgagatcgatgcccgctaccgcaagcgcctcgatttcgagctcgacatcatcatccag
atgggcttccccggctacttcctgatcgtgatggactttatccagtgggccaaggacaac
gatgtccccgtcggtccggggcggggctccggtgccggctccctggtggcctatgcccag
aagatcaccgacctcgacccgctggagtatgacctgctcttcgagcgcttcctcaacccg
gagcgggtctccatgcccgacttcgacgtcgacttctgcatggagaagcgcgaccgggtg
atcgactatgtggccgaccgctacggccgcaacgccgtgtcgcagatcgtcaccttcggc
accatggccgccaaggcggtggtgcgcgacgtggcccgcgcccagggcaagccctactcg
ctgggcgacaagctctccaagctgatccccttcgaggtgggcatgacgctggccaaggcc
atcgagcaggagccggccctcaaggagttcctcgacaacgacgaggaggccgccgagatc
tgggagatggccaggaagctcgagggcatcacccggggcaccggcaagcacgccgggggc
gtggtgatcgctcccaccaagctcaccgacttctcgcccctgctgtgtgacgaggacggc
aatggcctggtggtgcagttcgacaagaacgacatcgaggaggccgggctggtcaagttc
gacttcctcggcctgcgcaccctgaccatcatcgactgggccctggagatggtcgacaag
gtgcgcgccgccgccggcgagggctcgctgaatatcgacgccatccccctggacgatgcc
cccaccttcgagatgctcaagcgcgccgagaccacggcggtcttccagctcgaatcccgc
ggcatgaaggagctgatcaagcgcctgcagccggactccctggaggacatgatcgccctc
gtcgccctgttccgccccggtcccctgcagtcgggcatggtcgacgacttcatcaaccgc
aagcatggccgggcggagatctcctacccccacccggactaccagcacgaatggcttaag
ccggtgctggagcccacctacggcatcatcctctaccaggagcaggtgatgcagatcgcc
caggtgctggccggctacagcctggggcaggcggatatgctgcgccgtgccatgggcaag
aagaagcccgaggagatggccaagcagcgggtcggtttcatggagggctgcgcggccaac
ggcatcgagaaggagctggcggggaatatcttcgacctggtggagaagttcgccggctac
ggcttcaacaagtcccactcggcggcctatggcctggtgtcgtatcagacggcctggttg
aaggcccactacccggggccctttatggcggcggtgatgtccaccgagatggacaacctg
gacaaggtggtgccgctgatcgaggagtgtcgcaacctccggctcaccgtgaccccgccg
gacgtcaacgtcggcacctacaagttcaccgtggatacccaggcccgggtggtctatggc
ctgggtgccattcgcggcgtgggcgaggggcccatcggcgccatcgtcgaggcccgggag
gcggagggccccttccaggacctcttcgacttctgccgccgggtcgaccccaaacgcatg
aacaagcgcaccctggaggcgttgatccgctccggtgccctggacaacctgggccccaac
cgcgccgtgctggccgcggccctggacgatgccctcaaggccgccgcccagacccagacc
aaccagaacctgggcatgatggacatgttcggcgaggccttcgccgacgaggccgagggc
ggcgatgtctatgccgactaccgcggcgtacgggagtggaccgacaaggagcgcctgggc
ggcgagaaggagaccctggggctctacctgactggccaccccatcgacgagtacgagcag
gagctcaagcgcttcgtggccacgcggatcgccgacctcaggccatcccgggagccccag
cggatcgccggcctggtggtgggggtgcgcaccatgaagtccaagcgcggcgacaccatg
gccttcctgaccctggacgaccgcaccgggcgcatcgaggcctcgctgttcggcgagctc
tatgaccagttacgcgggcagatcgaggccgaccaggtgctgatcatcgagggcgaggtc
tccagcgacgactactccggtggcctgcgcctgcgtggcaaggaggtcacccccatggtg
acggcgcgcacccgttacgcccaggcggtggagctgcgtatcgacggccagcgcgccaat
ggccggttgatccgcagcctggaggcgagcctcgagccttaccgcagcgccgaggggctg
ccggtgcgcctgcactaccgcaacgagcgcgccggcggctggctggagttggccgaggtc
tggcgggtggcccccagcgacgacctgctgatcgccctgcgcgaggtcgaaggccaggac
ggggtggggctaagttaccgctag
DBGET
integrated database retrieval system
