Halomonas sp. H5: ACQ1W9_18075
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Entry
ACQ1W9_18075 CDS
T11362
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hphz Halomonas sp. H5
Brite
KEGG Orthology (KO) [BR:
hphz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hphz03021
]
ACQ1W9_18075 (rapA)
Transcription machinery [BR:
hphz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ACQ1W9_18075 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
NAT10_TcmA_helicase
Flavi_DEAD
Nitro_FeMo-Co
Motif
Other DBs
NCBI-ProteinID:
XUK18072
LinkDB
All DBs
Position
3902007..3904940
Genome browser
AA seq
977 aa
AA seq
DB search
MSEFSPGQRWISDGEAELGLGTVLNCDFRTVTVLFSASQETRTYSVRQAPLTRVAFGSGD
RIQAAEGWFLTVDDSKDANGLIIYIGEDDDGELRELPEVRLADTMQFNQARDRLLTGQVD
RNDWFDLRFRTLHHHARVEQHPALGLAGPKIDLIPHQLYIAEEVAGRHAPRVLLADEVGL
GKTIEAGLILHRLLLSGRAERALILVPDSLTHQWLVEMLRRFALKVTLLDEHQSLAHGDA
NPFDSGQLVLASQQWLFANPHRQAQAEACDWDLLIVDEAHHLDWSPEQSGPGYACVERLA
GAIAGVLLLTATPEQMGVASHFARLRLLDPERYQSLERFQAEEQGYVRVAEAIDALEQES
LDAQARDRLGAVVDDADSEALLALLANPESDADQRARARAQLREQLLDRHGTGRVMFRNS
RRHVGGFPERRLTVTPLEAPSAYRRVLRKLDRDEDYLDELLIETGLDHPEVLLYLDTMYQ
AQADDPLNAEPWWQFDPRVTWLLEYLVEHGDDKVLVIAHDKATAQGLAEGLRVLGGVHAP
VFHEDLSLVERDRAAAAFADAEEGCQVLVCSEIGSEGRNFQFCHHLVMFDLPQHPDQLEQ
RIGRLDRIGQRHPIEIQVPVFTGSPGERLLRWYREGMDAFGAPHGVGNDLFAAFGDALAD
ALLDDEGLEEVIAETRALFESRLAERDAGRNRLLELNACRPARAEATAAAIRELDEDKVL
PRYLDQALDIFGVDSQELGGKILHLRAGPQMLDGLPGLVKGEEGFSATLARDVALARDDV
QRLSWEHPLLREMMGRILDGAMGNTALALLKHPAIPAGRVMAELVFRTHCPAPKKLHINR
FLPATAVRVLLDESGANLSDKVSFTGLAKNLQKVKKAVARDLIKSRHEQLRELLDKGEAE
AERELPSIVEAAQQRMRDGLDGELARLSALARHNPAVREDEIQALRDERAALDAAIEGTR
LRLDAVRVIVTIDNETR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaattttctcccggtcagcgctggatcagcgacggcgaagccgagctgggcctg
ggcaccgtcctgaactgtgatttccgcaccgtcaccgtgctgttcagcgccagccaggaa
acccgaacctacagcgtgcgccaggcgcccctgacccgcgtggccttcggcagcggcgac
cgcatccaggccgccgagggctggttcctcaccgtcgacgacagcaaggacgcgaacggc
ctgatcatctatatcggcgaggatgacgacggcgagctgcgcgagctgcccgaggtgcgc
ctggccgacaccatgcagttcaaccaggcccgggaccgcctgctgaccggccaggtggat
cgcaacgactggttcgacctgcgcttccgcaccctgcaccaccatgcccgcgtcgagcag
cacccggccctgggcctggcgggccccaagatcgacctgatcccccaccagctgtatatc
gccgaggaggtggccgggcgccatgcgccacgggtgctgctggccgatgaggtgggcctg
ggcaagaccatcgaggcgggcctgatcctgcatcgcctgctgctcagcggccgcgccgag
cgcgccctgatcctggtgccggacagcctgacccaccagtggctggtggagatgctgcgc
cgcttcgccctcaaggtgaccctgctcgacgagcatcagagcctggcccatggcgacgcc
aaccccttcgacagcggccagttggtgctggccagccagcagtggctgttcgccaaccct
caccgccaggcccaggccgaggcctgcgactgggacctgctgatcgtcgacgaggctcat
cacctggactggtcaccggagcagagcggccccggctacgcctgcgtggagcgcctggcc
ggcgccatcgcgggggtgttgctgctcaccgccaccccggagcagatgggcgtggccagc
cacttcgcccgcctgcgcctgctcgacccggagcgctaccagagcctggagcgcttccag
gccgaggaacagggctatgtgagggtggccgaggcgatcgatgccctcgagcaggagagc
ctcgatgcccaggctcgggatcgcctcggcgccgtggtggacgatgccgacagcgaggcc
ctgctggcgctgctggccaacccggagagcgacgccgaccagcgggctcgggcccgcgcc
caactgcgcgagcaactgctcgaccgccatggcaccggccgggtgatgttccgcaacagc
cgccgccatgtgggcggcttcccggagcgccgcctgacggtcacccccctggaggccccc
agcgcctaccgccgggtgctgcgcaagctggatcgcgacgaagactacctggacgagctg
ctgatcgagaccggcctcgaccacccggaggtgctgctctatctggataccatgtaccag
gcccaggcggacgatcccctgaatgccgagccctggtggcagttcgacccccgggtcacc
tggctgctcgaatatctggtggagcacggcgacgacaaggtgctggtgatcgcccacgac
aaggccaccgcccagggcctggccgagggcctgcgggtgctgggcggcgtgcatgcgccg
gtatttcacgaggacctctccctggtggagcgggaccgggccgcggcggccttcgccgac
gcggaggagggttgtcaggtgctggtctgctcggagatcggctccgaggggcgcaacttc
cagttctgccatcacctggtgatgttcgacctgccccagcacccggaccaactggagcag
cgcatcggccgcctcgaccgcatcggccagcgccaccccatcgagatccaggtgccggtg
ttcaccggcagtcccggcgagcggctgctgcgctggtatcgggagggcatggacgccttc
ggcgccccccacggcgtcggtaacgacctcttcgccgccttcggcgatgccctggccgac
gccctgctcgacgacgagggcctggaggaggtgatcgcggagacccgggcgctgttcgag
agccgcctggccgagcgcgacgccgggcgcaaccgcctgctggaactcaatgcctgccgc
ccggcccgggccgaggccaccgccgccgccatccgcgagctggacgaggacaaggtcctg
ccccgctacctggatcaggcgctggatatcttcggcgtcgacagccaggagctgggcggc
aagatcctccacctgcgcgccgggccgcagatgctcgacggcctgccggggctggtcaag
ggcgaggagggcttctccgccaccctggcccgggacgtggccctggcccgagacgacgtc
cagcgcctctcctgggagcaccccttgctgcgcgagatgatggggcgcatcctcgacggc
gccatgggcaacaccgccctggcgctgctcaagcatccggcgattcccgccggccgggtg
atggccgagctggtcttccgcacccactgcccggcccccaagaagctgcatatcaaccgc
ttcctgccggccacggcggtgcgggtgctgctcgacgagtccggcgccaacctcagcgac
aaggtctccttcaccggcctggccaagaacctgcagaaggtcaagaaggcggtggcccgg
gacctgatcaagagccgccacgagcagctgcgcgagctgctcgacaagggcgaggcggag
gcggagcgggagctgccctccatcgtcgaggccgcccagcagcgcatgcgcgacggcctc
gacggcgagctggctcgcctcagtgccctggcccgccataacccggcggtacgcgaggac
gagatccaggccctgcgcgacgagcgcgccgccctggacgccgccatcgagggcacccgg
ctacgcctggatgcggtgcgagtgatcgtcaccatcgataacgagacccgttag
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