Helicobacter pylori 908: hp908_0260
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Entry
hp908_0260 CDS
T01893
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpi
Helicobacter pylori 908
Pathway
hpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hp908_0260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpi03019
]
hp908_0260
03009 Ribosome biogenesis [BR:
hpi03009
]
hp908_0260
Enzymes [BR:
hpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
hp908_0260
Messenger RNA biogenesis [BR:
hpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
hp908_0260
Ribosome biogenesis [BR:
hpi03009
]
Prokaryotic type
rRNA helicases
hp908_0260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
AAA_30
P-loop_SecA
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADN79390
LinkDB
All DBs
Position
246515..247990
Genome browser
AA seq
491 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
KHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFKKGQHRDKHPK
TNRYSKKPKRR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgacgatgacgcttatcataagcct
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggcttc
acttccccaagccccattcaagaaaaggccattccggctgttttacaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaattcattaagaaaaacccccaagtg
atgatcgccacgccaggaaggctgttggatcatttaaaaaacgagcgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatgggatttttagac
gacattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgatcaaaaggctagcggataagattttagaaaaccctattaaaatc
catattgccccctctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
aagcatgaaagggctgaagcgatcatgcgccttttagacacccaagcgcctgaaaagagc
atcgttttcacgcgcaccaaaaaagaggccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcgccgctcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacggatgtggcgagccgtggg
ctagacattagcggtgtaagccatgtgtttaattaccacttgcccctaaacactgagagc
tatatccatcgcattgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccctttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagtaaaattggcttgaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaacccccaaacaaaaaa
acgcagcacgagccagcacactcttttaaaaagggtcagcacagagacaaacaccccaaa
acgaatcgttattctaaaaaacccaaacgccgttaa
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