Helicobacter pylori 908: hp908_1109
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Entry
hp908_1109 CDS
T01893
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunitB
KO
K03702
excinuclease ABC subunit B
Organism
hpi
Helicobacter pylori 908
Pathway
hpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
hp908_1109 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpi03400
]
hp908_1109 (uvrB)
DNA repair and recombination proteins [BR:
hpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
hp908_1109 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
hp908_1109 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_7
Microtub_bd
HAM1_N
SWI2_SNF2
AAA_22
DUF87
DUF1054
Motif
Other DBs
NCBI-ProteinID:
ADN80232
LinkDB
All DBs
Position
complement(1082216..1084192)
Genome browser
AA seq
658 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK
LRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatttgatttaaaaagcccttatccaccagcaggcgatcagccccaagccata
gaagctttaacgaaaagcttgaaaaataacaaccattatcaaactctagtgggggttaca
gggagcggtaagacttacacgatggctaatgtcatcgctcaaaccaataagcctactttg
atcatgagccataataagaccttatgcgcgcagctttatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgattactaccagcctgaaagctat
atccctaggagggatttattcattgaaaaagacagctctattaacgatgacttggagcgt
ttgagattgagcgcgaccacctcgcttttaggttatgatgatgtgattgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttacaagagctttttattaaagctagtggaaatgggttat
agccgtaatgaagtggtgtttgatagggggagctttagagcgacgggggaatgcgtggat
attttccccgcttataatgacgctgaatttattaggattgaattttttggcgatgagata
gaaaggattgctgtctttgacgctttagaaagaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgctgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctctaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcgaccggt
gtgtgtaagggcattgaaaattacgcacgccattttacgggtaaagcccctaacgaaacg
cctttttgtttgtttgattatttagggatatttgagcgggagtttttagttattgtagat
gaaagccatgtgagtttgccgcaatttggagggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatacggctttagattgcctagcgctttagacaaccgccctttaaag
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttctcaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttgtttgatgaa
atcaagtcagtggtggctagaggtgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgtaaatattatgctgaatggggcttgaaggtgcgttacatgcatagt
gaaattgatgcgattgaaaggaatcacattatccgctctttaaggcttaaagaatttgat
gttttaatagggatcaatcttttaagagaggggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgctaatggtaaggttttattatacgctaaaaagatcact
caaagcatgcaaaaagcctttgaaatcacgagttacaggcgcaccaagcaagaagagttt
aataaaatccataacatcacccccaaaaccgttacgcgcgctttagaagaggagttgaaa
ttaagagacgatgaaatcaaaatcgctaaagctttaaaaaaggacaaaatgcctaaaagc
gaaagggaaaaaatcattaaagaattggataaaaaaatgcgagagtgtgcgaaaaatttg
gattttgaagaagcgatgcgtttgagagacgaaatcgctcaattaagaacgctttaa
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integrated database retrieval system
