Helicobacter pylori 908: hp908_1199
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Entry
hp908_1199 CDS
T01893
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpi
Helicobacter pylori 908
Pathway
hpi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
hp908_1199 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpi03021
]
hp908_1199 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpi03400
]
hp908_1199 (rpoB)
Enzymes [BR:
hpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
hp908_1199 (rpoB)
Transcription machinery [BR:
hpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
hp908_1199 (rpoB)
DNA repair and recombination proteins [BR:
hpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
hp908_1199 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADN80322
LinkDB
All DBs
Position
complement(1168675..1177347)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKEFKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMINREELLRVSSLLSQAILEEPFSHKGKDYKKGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIMIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVVLDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDHLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMSAIAKDKEGFNSIYMMADSGARGSTA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDECEIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYANGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGVIKYYVLEANHLERTHGVKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSLISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKSIRNKEHIIVTSKDGRLTDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDNSKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagttcctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagtgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttggaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgtttgatcttatgggaaaaagacaccaaaagtggcgaaaagaacggaatcaaggatatt
aaagagcaaagcattttcattcgtgagatccctttaatgacagaacgcacttcatttatt
atcaatggagtggaacgcgtggtggtcaatcagctccacagaagtcccggtgtgattttt
aaagaagaagaatctagcacttcttcaaacaaactcatttacacagggcaaatcattcct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttgtacgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgtgaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagacccgcaa
ggcaagattatccttttagcgggtaaaaagctcacttcaaggaagattaaagagtttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtagggaaagaagttttattggacatgctcacgcagttggataaaaac
agactagaaaaaatccacgatctaggcgtgcaagaatttgtgattattaacgatttagcg
ttagggcatgacgcttccattattcattctttctcagccgatcatgagtctttgaaattg
ctcaagcaaactgaaaagattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggccaagcaatttgtcaagaaactt
ttctttgaccctgaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgacagggatcactta
ggcaatcgtaggatcagggcggtaggggaattactagccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaaactcaccaccatgagcggggcttttgattcg
ctcatgccccatgatttagtcaattctaaaatgatcaccagcacgatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaaccaaccctttgagtgaggttacgcac
aaacgacgcctttcagcgctcggtgaaggggggttggtaaaagacagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtggtgggcgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcctgcaagcacccccattgatgaagag
gggaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aagagtaaagttaccttaatggatctaagctctagcatgctagtaggggtagccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgctctaatggggactaacatgcaa
cgccaagcggtgcctttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggggcgatcaaggccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaacatttatattttaggcgaaggcaaagaagaagcctatattgacgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagcttcaatcaagtccctatc
gttaaagtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctac
aattttgaagacgcgatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acccacatttatgaaaaagaagtggatgccagagagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgcccatcttgatgaaagcgggatc
gttaaagtcggcacttacgtgagcgctggcatgattttagtgggcaaaacttctcctaaa
ggcgagattaaaagcacgcctgaagaacggctcttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaggtcttcactaaaaaaggctatgagaaagacgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgatcaatagagaa
gaattgttgcgcgttagctcgctcctttctcaagcgattttagaagagcctttcagccat
aagggcaaggactataaaaaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaaaaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaacatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagagtttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagactttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagaattgctctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagttatttgagttagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcaccggcgaaaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcctagtaacgcaccaacccgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcgcacaccttaaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattatgatcaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagccagccctgaaaaaatccattcttggagctatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgtggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggtgtggcgatcacgcattccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggctttgtggcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacactaactctgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattccggt
aacaggcctgaatggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgtgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggagcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagcgagatcatt
aaaggcaaacaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggtggggcctaaccttaaaatggatgaatgcggattgcctaaaaac
atggcgttagagctattcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgagcaaaagagcaatgaagtgtgggagtgt
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctcattgacggcaaagcgatccaattgcaccca
ttagtgtgttcagcgttcaacgccgattttgacggggaccaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctcatgctaagctctatgaacatcctt
ttacccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgattatcaagtccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtgggcggtatcggtattactgcaacctttttggatcatttg
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtggaggttaaaaaaatc
caacaacaatacgatcaagggttactcactgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacagaatgagtaaagaaatgatgagcgctatcgcaaaagat
aaagagggctttaactctatttatatgatggcggatagcggcgcaagggggagcacggcg
caaatccgtcagctctcagcgatgagggggcttatgacaaagccggatggcagtatcatt
gaaacgcctattatttctaactttaaggaggggttgaatgtcttagaatactttaactcc
acccatggcgctagaaagggcttagcggatacagcactaaaaacagccaatgcggggtat
ttgacaagaaaactcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattaccaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgt
gcgaagtgctatggcttgaatttaggcgaaggcaagatgagctatccgggtgaagcggta
ggcgtggtagccgcgcaatctatcggagagcctggaacacagctcactttaaggactttc
catgtgggcgggacagcgagtaggagtcaggatgagtgcgagatcgtggcgagcaaagaa
ggttttgtgcgtttttacaaccttaggacttacacgaataaagagggtaaaaacattatc
gccaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattgcgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaattcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaagggaaagtgtatttgccttacgctaatgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctggttaaagataatgaccctatcgcgcaagatgtgtatgccaaa
gaaaaaggtgtgatcaaatactatgttttagaggccaatcatttggagcgcacccatgga
gtcaaaaagggcgatattgtgagtgaaaaaggcttgtttgcggtggtagctgatgataat
ggcagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagccttatttctaaacccacgactaacactttcaaaacgatc
gccacatgggatccttacaacacccctattattgcggactttaagggtaaggtgagtttt
gtggatattatcgcaggggttacggtcgctgagaaagaagacgaaaataccggtatcaca
agcctagtggtgaatgattacattccaagcgggtacaaaccaagcttgtttttagagggg
gctaatggcgaagaagcgcgttatttcctagagccaaaaacttctatcgctattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgtcaaatcc
agggatattaccgggggtctcccaagggtttctgaactctttgaagcgagaaaacctaaa
cctaaagacgtggcgatcctttctgaggttgatgggattgtgagttttggtaaatctatc
cgcaataaagaacatatcatcgtaacttccaaagatggtcgtctcacagattattttgtg
gataagggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaggcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaggttcaacaagtgtatcgcaggcagggggtaagcattgcggac
aaacacattgaaatcattgtgtctcaaatgttaaggcaagtgcgcatcttagacagtggg
gatagcaagtttattgaaggggatttggtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaag
gttttaacagaagccagtattgcgatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaggataactctaaattttga
DBGET
integrated database retrieval system
