Helicobacter pylori 908: hp908_1416
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Entry
hp908_1416 CDS
T01893
Name
(GenBank) RNA-metabolising Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpi
Helicobacter pylori 908
Pathway
hpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hp908_1416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpi03019
]
hp908_1416
Messenger RNA biogenesis [BR:
hpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
hp908_1416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ADN80537
LinkDB
All DBs
Position
1366762..1368849
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AA seq
695 aa
AA seq
DB search
MTDNNHYENNNENNENSSENSKDHHEARAGVFERFTNRKKRFRENAQKNAESSNHEAPSH
HKKEHRPNKKPNNHHKQKHASQKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKK
GVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSF
PKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLG
LIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIH
TGDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFK
EAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFI
EANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEAS
VSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHK
QTAIACGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTNIVQQREE
VASAGVFAATIFVNKNKQTLLESSQFSSLGLVGFKDEKHLVKEIQGGLEVLLKSSNAEIL
NNPKKLEDHTRNFIRKALFKKFRKYPAIICHVHSF
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccattatgaaaataataatgaaaacaacgaaaacagcagtgaaaat
tcaaaagatcaccatgaggcacgagccggagtgtttgagcgattcaccaaccgcaaaaag
cgtttcagagaaaacgcgcaaaaaaacgcagagtcttcaaaccatgaagcgccttcgcac
cataaaaaagagcatcgccccaacaaaaagccaaacaaccaccacaaacaaaaacatgcc
tcccaaaaaacacgaaattacgccaaagaagaattggataacaacaaagtagagggcgtt
acggaaattttgcatgtgaatgagagagggactttaggctttcataaggaactcaaaaaa
ggcgttgaagcgaataacaagatccaagtggagcatttaaaccctcattataagatgaat
ttaaactctaaagcgagcgttaagatcacgcctttagggggcttgggcgagattgggggg
aacatgatggtcattgaaaccccaaaaagcgcgatcgtgattgatgcgggcatgagtttc
cctaaagaggggctttttggcgtggatattttaatcccggatttttcctacttgcaccaa
atcaaggacaaaatcgccggtattattatcacccatgcccatgaagatcacataggggcc
acgccttatttgtttaaagagttgcaattccccctttatggcacgcctttgagtttgggg
ctgattgggagcaagtttgacgaacatggtttgaaaaaataccgctcgtattttaaaatc
gtagaaaagcgttgccctattagcgtgggcgaatttatcattgaatggatccacatcacg
cattctattattgacagcagcgctttagcgatccaaactaaagccggaacgatcatccac
accggcgattttaaaatcgatcacactccagtggataatttgcccacggatttgtatcgt
ttagcgcactatggcgaaaagggggtgatgcttcttttaagcgattccacgaactcccat
aaatccgggaccacgccgagtgaaagcaccatagcgccggcttttgataccctttttaaa
gaagcgcaagggagggtgattatgagcaccttctctagcaatatccaccgggtttatcaa
gccatacaatacggcatcaaatacaaccgcaagatcgctgtgatcgggcgctctatggaa
aaaaacctagacatcgctagagaattgggctatatccatttgccttatcaatcttttatt
gaagccaatgaagtcgctaaatacccggacaatgaagtcttaatcgtaacgaccggctca
caaggcgaaaccatgagcgcgctttatcgcatggcgaccgatgagcaccgccacatttct
atcaaacccaacgatttagtcatcatttccgctaaagccattcctggcaatgaagcgagc
gtttcagcggtgttgaatttcttgatcaaaaaagaagctaaagtggcttatcaagaattt
gacaatatccatgtgagcgggcatgccgcccaagaagagcaaaagctcatgctaagactc
attaagcctaagtttttcttacccgtgcatggggaatataaccatgtcgcacgccacaaa
caaaccgctattgcttgcggggtgcctgaaaaaaatatctatttaatggaagatggtgat
caggtggaagttggccctgcgttcatcaaaaaagtcggcacgattaaaagcggtaaaagc
tatgtggataaccaaagcaatttgagtattgacacaaacatcgtgcagcaaagagaagaa
gtcgctagcgctggggtgtttgcggctacgatctttgtgaataaaaacaaacaaacactt
ttagaaagctctcaattttccagtttagggcttgtgggtttcaaagatgaaaagcatttg
gttaaagaaattcaaggaggcttagaggtgttactgaaatccagcaacgccgaaattttg
aataaccctaaaaaattagaagatcacactcgtaatttcatcagaaaagcgctctttaaa
aagtttagaaaatacccggctatcatttgtcatgtccattctttttga
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