KEGG   Halomonas piscis: P1P91_06890
Entry
P1P91_06890       CDS       T09638                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hpis  Halomonas piscis
Pathway
hpis02020  Two-component system
hpis02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hpis00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    P1P91_06890
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    P1P91_06890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpis03021]
    P1P91_06890
Transcription machinery [BR:hpis03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     P1P91_06890
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_21 HTH_AraC HTH_23 LacI
Other DBs
NCBI-ProteinID: WNK21393
LinkDB
Position
complement(1481612..1483018)
AA seq 468 aa
MAMKASLQLRVGTQLTMTPQLRQAIGLLQLPTLDLRQEVQQAVEANPLLEQEDEFDEQTA
VEPAEDGWAEQIPDELAVDSDWSDTYPDTQQTAGEGPDFERQAAGQTLHGHLLWQLAMLD
LTPDDRLTGEALIDAVDANGYLTQPLDAIGDGLEDQQGKPVGAERLERMLDRLQQFDPTG
VFARDLGECLSLQLDALPGTTPLLMPARRLARQFLTALGRGDRRLLKRRLGLDDAGLDEV
IKLIKSLDPRPGSAFDSAGSGQVLPDLLARRSEDGWQLELNPEALPQLRIQPDYAALIQK
ADSSRDNSFLKEHLQEARWLIKSLASRNDTLLRVGREIMARQLDFLDHGEAAMKPLVLAD
IAEAVGMHESTVSRVTTQKFLHTPRGVFELKYFFSSQLTGDDDSAHSSTAIRARIKQLIE
QEPPAKPLSDSRLAALLDEAGIRVARRTVAKYREALGIPSTSERRRRS
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggccatgaaagcgtctctccagctacgcgtcggtacccagctgaccatgacgcctcag
ctccgccaggccatcggtttactgcagctgccgacgctggacctgcgccaggaggtccag
caggcggtggaggccaaccccctgctcgagcaggaagacgagtttgacgagcagaccgcc
gtcgagcccgccgaagacggctgggccgagcagatccccgacgagctcgccgtggacagc
gactggtccgacacctacccggacacccagcaaaccgccggcgagggccccgacttcgag
cgccaggccgccggccagactcttcacggccacctgctctggcagctggccatgctcgac
ctgacgcccgacgacaggctcaccggcgaggcgctgatcgacgccgtggacgccaacggc
tacctgactcagccgctggacgccataggtgacggccttgaggatcaacagggcaagccc
gtcggcgccgagcgccttgaacgcatgctcgaccgcctgcagcagttcgacccgaccggc
gtctttgctcgggatctgggcgaatgcctctccctgcagctggatgccctgcccggcacc
acgccgctgctgatgcccgcccgccggctggcgcggcagtttctcaccgcccttggccgc
ggcgacagacgcctgctcaagcgccggctgggccttgacgacgccgggctcgacgaggtc
atcaagctgatcaaaagcctggatccgcgccccggcagcgcctttgacagcgccggcagc
ggccaggtactgcccgacctgctcgcccggcgcagcgaggacggctggcagctcgagctc
aaccccgaggcactgccgcagctgcgtatccagcccgactacgccgcgctgatccagaag
gccgacagcagccgggacaacagcttcctcaaggagcacctgcaggaggctcgctggctg
atcaagagcctcgccagccgcaacgatacgctgctgcgcgtcggccgcgaaatcatggcc
cgccagctcgatttcctcgaccacggcgaggcggccatgaagccgctggtgcttgccgat
attgccgaggcggtgggcatgcacgaatccacggtttcccgggtgacaacgcagaagttt
ctgcatacgccccgcggcgttttcgagctcaagtactttttctccagccagctcacaggc
gacgatgacagcgcccactcgagcaccgccattcgcgcccgcatcaagcagctgatagag
caggagccgcccgccaagccgctgtccgacagccgtctcgccgcgctgctcgacgaagcc
ggcatccgggtggcccgccgcaccgttgccaaataccgcgaggccctgggcataccatcc
accagcgaacggcgccgccggagctga

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