Halomonas piscis: P1P91_07210
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Entry
P1P91_07210 CDS
T09638
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hpis
Halomonas piscis
Pathway
hpis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P1P91_07210 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpis03019
]
P1P91_07210 (rne)
03009 Ribosome biogenesis [BR:
hpis03009
]
P1P91_07210 (rne)
Enzymes [BR:
hpis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P1P91_07210 (rne)
Messenger RNA biogenesis [BR:
hpis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P1P91_07210 (rne)
Ribosome biogenesis [BR:
hpis03009
]
Prokaryotic type
rRNA processing factors
P1P91_07210 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WNK21452
LinkDB
All DBs
Position
complement(1542347..1545124)
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AA seq
925 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFVKDVNGRPSIKEVIKEGQEVTVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEDRSQLKNAMSQLTMPDKMGLIVRTAGIGRTPEELQW
DLDYLVQVWESITAEAGKHATPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQRKVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRT
RDALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSV
MRLLEEEAMKERSAQIRAVLPVPVATYLLNEKRSVLADIEARQDVRVVLLPNPDMDTPHY
DVQRLRDDHLEGGDLTAASSFELPVESEAGKESEPGMTPPAQRDVAAVKSVTHNAPAPAS
LQSDGHSAPRTTAEATPDASSGVVGRFIRGFAKFLGAEETEQALEKTQSRQASDADERRS
RPAPARHKPAVERRPRSANQQQSRSGKGSTAGHDSASRQGKSSAKDTGSDAAGKSRSRTG
DETAKTEASSKSSSNAQRSHASRSDKSDDTRSDAQRKPASADSQRSGPSRSRSRRRHPQQ
DSKERQSAAAAPRADKPADTPATLPKEAEPQTGRQPDEAKAASPNEAPAVAVDTPKRTRN
NPRKRSRKQALNPKAEAEQLRLQAEAEAPAAEKADAPAAEKPAAPKKAAEPVPEKPPEKA
PQKAEEKAPARAAEKADAPAAEKPTAPEKAAEPTPEQPPEKAPQKAEEKAPARAAEKAPA
KPRRRRRAHNDPREQRRRQQENSAE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgcgacccagcctgaagagctgcgcgtcgctcttgtcgat
ggtcaacgcctttacgatctggatatcgagtccggcgcccgggagcagaaaaaagccaac
atctaccgcggccgcatcacccgggttgaaccttccctggaagccgcttttgtcgatttt
ggcgccgagcgccacggctttctgccgctgaaggaaatctcccgggaatatttcgtcaag
gacgtcaacggccgccccagcatcaaggaagtgatcaaggaaggccaggaagtcaccgtc
caggtggacaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccgggcgctttctggtattgatgcccaacaacccccgcgccggcggcatttcccggcgc
atcgaaggcgaggaccgcagccagctcaaaaacgccatgagccagctgaccatgccggac
aaaatgggcctgatcgtgcgtaccgcgggtatcggccgcacgcccgaagagctccagtgg
gacctggattatctggtgcaggtgtgggagtcgatcaccgcggaggccggcaagcacgcc
acgccctttttgatctaccgcgagtccaacgtcatcatccgcgccatgcgcgactacctg
cgccaggacatcggcgaggtgctgatcgacagccccgagatccacgccgaagcgctgggc
tttattcgccaggtcatgccctcctaccagcaaaagatcaagctctacgccgacgaggtg
ccgctgttctcgcgctttcagatcgaatcccagatcgagaccgcctaccagcgcaaagtc
aagctgccctcgggcggctccattgtcatcgaccacaccgaagcgctggtctccatcgac
atcaactcggcccgggcgacccggggcagcgatatcgaagaaaccgcgctgcagaccaac
agcgaagccgccgacgaaatcgcccgccagctgcgcctgcgcgacatcggcggcctggtg
gtcatcgacttcatcgacatgggcccggcgcgcaaccagcgcgaagtggaaaaccgcacc
cgtgacgcgctcaagatcgaccgcgcccgagtccagatcgggcgaatttcgcgctttggc
ctgatggaaatgtcacgccagcgcctgcgcccgtcgcttggcgaaaccagcggcgtggtc
tgcccgcgctgtaacggccagggcaccatccgcgacgtgcgttcgctgtcgctgtcggtg
atgcgcctgctcgaagaagaagccatgaaagagcgcagcgcccagatccgcgccgttttg
cccgtaccggtcgccacctacctgctcaacgaaaagcgcagcgtgctggccgatatcgaa
gcgcgccaggacgttcgcgtggtgctgctgcccaacccggacatggacacgccgcactac
gacgttcagcgcctgcgcgacgaccatctggaaggcggcgacctcaccgcggcctccagc
ttcgagctgcccgtggaaagcgaagccggcaaggagtcggagcccggcatgacgccgccg
gcccagcgcgacgtcgccgcggtcaagagcgtaacgcacaacgccccggcccccgcttcg
ctgcaaagcgacggccacagcgcccctcggacgactgcagaagccacccccgacgcctcg
tccggcgtggtgggccgctttatccgcggttttgccaagtttctgggggccgaagaaacg
gaacaggcactggaaaagacccaaagccggcaggcatccgacgcggacgagcgccggtcg
cgcccggcgccggcccggcacaagccggccgtcgagcgccgcccgcgcagcgcaaaccag
cagcaaagtcggtcgggcaagggcagcaccgccggtcatgacagcgcttcgcgccagggc
aagagctcggcaaaagataccggcagcgacgctgccggcaagtcccgcagccgcacgggc
gacgagacggcaaaaaccgaggcctcaagcaagagctcgtcgaacgcccagcgtagccac
gcatcgcgcagcgacaagagcgatgacacgcgcagcgatgcccagcgcaaacccgccagc
gcggacagccagcgcagcggccccagccgctcgcgcagccgtcgtcgccacccccagcag
gacagcaaagaacgccaaagcgcagcggctgcgccccgggcagacaagcccgccgatacg
cctgctaccctgcccaaggaggccgagccccagaccggcaggcagcccgacgaggccaaa
gctgcctcgccgaacgaagcgccggccgtcgccgtggacacgcccaagcgcactcgcaac
aacccgcgcaagcgcagccgcaagcaggcgctgaaccccaaggccgaagccgagcaactc
aggctccaggccgaagctgaagccccggcagcggaaaaggccgatgccccggcagccgaa
aagccggcagcgccgaaaaaggcggcggagccggtcccggaaaagcccccggaaaaagcc
ccgcagaaggccgaagaaaaagcgccggccagggcagcggaaaaggccgacgccccggca
gccgaaaagccgacagcgccggaaaaggcagcggagccgaccccggaacagcctccggaa
aaagccccgcagaaagccgaggaaaaagccccggccagggcagcggaaaaggcccctgcc
aagccgcgtcgccgtcgccgggcgcataacgacccgcgcgaacagcgccgtcgccagcag
gagaacagcgccgagtag
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