Haemophilus pittmaniae: NCTC13334_00237
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Entry
NCTC13334_00237 CDS
T06001
Symbol
deaD
Name
(GenBank) DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpit
Haemophilus pittmaniae
Pathway
hpit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13334_00237 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpit03019
]
NCTC13334_00237 (deaD)
03009 Ribosome biogenesis [BR:
hpit03009
]
NCTC13334_00237 (deaD)
Enzymes [BR:
hpit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13334_00237 (deaD)
Messenger RNA biogenesis [BR:
hpit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13334_00237 (deaD)
Ribosome biogenesis [BR:
hpit03009
]
Prokaryotic type
rRNA helicases
NCTC13334_00237 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SidE_PDE
UvrA_inter
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
SNV62442
LinkDB
All DBs
Position
1:251978..253792
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AA seq
604 aa
AA seq
DB search
MTEQMTFNELGLPEFILNAVSDLGFETPSPIQQVCIPHLLAGRDVLGMAQTGSGKTAAFA
LPILAQIDSHQKHPQMLVMAPTRELAIQVADACEQFMKYAQGINIVTLYGGQRYDIQLRA
LRQGAQVVVGTPGRILDHLRRGTLDLSGLKAIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMQDPQEVKIKVNQDNAPDIEQNCWYVRGFRKNEALLRFLE
VEDFDAAILFTRTKSGTMDVTELLTRNGFRAAALNGDMTQQTREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
HLMKKPINEVELPNHEILQTSRRKKFVAQITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRSRRERDERRENPRSAERRGERKGYGNPQPMDMYRIE
VGRGDGVEVRHIVGAIANEADINSRYIGHIKLYDNYSTVELPQGMPKELLQQLGKTRVLN
RPMQMSLIGEAKSDNGRGDDFGGKRRERRNDRFQERNQDNFRERKRFDKGSRSFNDKPRR
DRRS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaatgacctttaatgaattaggcctacctgaattcattcttaatgccgtt
tccgaccttggttttgaaaccccttctccaattcaacaagtttgtattccgcacctgcta
gcaggacgcgatgttttgggtatggcacaaaccggtagtggtaaaaccgccgcctttgcc
ctccctattttggctcaaatcgatagccatcaaaaacacccgcaaatgttggtgatggcg
ccaactcgtgaattagccattcaggttgctgatgcctgtgaacaatttatgaaatatgcc
cagggtattaatatcgtgaccctttatggtggccaacgctatgacattcaactacgtgca
ctccgtcaaggtgctcaagtggttgtcggcacaccgggacgaattttggatcacctacgt
cgtggtactttagatttaagcggcttaaaagctatcgtattagatgaagccgatgaaatg
ttacgtatgggcttcattgatgatgtagaaaccgtgatggcagaattaccggaaaatcat
caaacagcgctgttctctgccacaatgccggaaccgattcgtcgtattacgaaacgcttt
atgcaggatccacaagaagtcaaaatcaaggttaatcaggacaatgcaccggatatcgaa
caaaattgttggtatgtccgtggcttccgtaaaaatgaagccttattgcgtttcttagaa
gtagaagattttgatgcagcaatcctctttacccgcacaaaatccggcacaatggatgtt
accgaattactcacccgtaacggattccgagcagcggcattaaacggcgatatgacacaa
caaacccgtgagcaaaccctcgatcgtctacgcaacggtagtttggatatcgtcgtggct
accgatgtcgccgcacgcggtattgatatcgaacgcattagcttggtagtaaactacgac
atcccattggatgccgaaagctatgtgcaccgtattggtcgtaccggccgtgcaggtcgt
tcaggtcgtgcgttactctttgtcgagcctcgtgaacgccgcttactgcgcaatatcgaa
catttaatgaaaaaaccgatcaatgaagtcgaattgccaaatcacgagattttacaaact
tcccgtcgtaaaaaatttgttgcgcaaatcaccaaacaattggaacaccatgatttggag
caataccgtagcttattggaagatttgttcaccgctgatcaggatcaagaagacatcgct
gctgcaatgctaatgctcttacaaggtaaacaaaaactgattctgccgccggatcctccg
atggaaaaacgtagccgtcgtgaacgtgatgagcgtcgtgaaaatccacgttcagcggaa
cgtcgtggtgaacgcaaaggttatggtaatccacaaccgatggatatgtatcgtattgaa
gtgggccgcggtgatggcgtggaagtgcgtcatattgtgggagcaattgccaatgaagct
gatatcaacagtcgctacatcggtcatattaaactttatgataactactccaccgttgaa
ttaccgcaaggcatgccaaaagaattattacaacaattaggcaaaacccgcgtgcttaat
cgtccaatgcaaatgagtctgatcggcgaagctaaatccgacaatggccgtggggatgat
tttggcggtaaacgccgcgaacgtcgcaatgatcgtttccaagaacggaatcaggataac
ttccgtgaacgcaaacgctttgataaaggctctcgcagctttaatgacaagcctcgtcgc
gaccgtcgttcataa
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