Haemophilus pittmaniae: NCTC13334_00735
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Entry
NCTC13334_00735 CDS
T06001
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpit
Haemophilus pittmaniae
Pathway
hpit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13334_00735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpit03021
]
NCTC13334_00735 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpit03400
]
NCTC13334_00735 (rpoC)
Enzymes [BR:
hpit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13334_00735 (rpoC)
Transcription machinery [BR:
hpit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13334_00735 (rpoC)
DNA repair and recombination proteins [BR:
hpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13334_00735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
SNV69088
LinkDB
All DBs
Position
1:720190..724440
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQFLDAEDRWQDEFEAK
MGAEAIQDLLKGIDLEVECEKLREELQETNSETKRKKITKRLKLLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGGFEEKTTLTDTTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADHIMYTGFAYAARSGSSVGIDDMVIPEKKYEIISAAEA
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNSEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVVTPLIEGGDEKVPLRELV
LGRVAAEDIYKPGTEEVLIARNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQIKNNGTLH
LVNAKFVTNDEGKLVLTSRNTELTVTDAFGRTKEHYKVPYGTVLNKADGQEVAAGETVAN
WDPHTMPVVSEVSGFVKFVDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDAKGNDIFLPETDVIAQYFLPGKAIVSLDDGAEVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRKREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKNRLVDDVVV
KLSEDDEQAIADEFVMSADDATSNLAEMLNMADDAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttctccagacatgatccgttcttggtcatttggtgaagttaaa
aaacctgaaacaatcaactatcgtacgttcaaacctgagcgtgacggtcttttctgtgca
cgtattttcgggcctgtaaaagattacgaatgtttatgcggtaaatataaacgcttaaaa
catcgtggtgtgatttgtgaaaaatgtggcgttgaagtaacacaaactaaagtgcgtcgt
gagcgtatgggccacattgaattagcctgtccggttgctcatatttggttcttaaaatct
cttccatcccgtatcggtttactattggatatgccgttgcgtgatattgaacgtgttctt
tattttgaaatgtacattgtgactgaaccgggtatgaccgatttggaacgtggacaatta
ttaaccgaagaacaattccttgatgccgaagatcgttggcaagatgaattcgaagcgaag
atgggtgctgaagcgattcaagatttgcttaaaggcattgatcttgaagtggaatgcgaa
aaattacgtgaagagttacaagaaaccaactctgaaaccaaacgtaagaaaatcactaaa
cgcctaaaattattggaagctttcttacagtcaggcaacaaaccggaatggatggtgatg
actgtattaccggtacttccaccggatttacgtccattagtaccattagatggtggccgt
tttgcaacttcagacttgaacgatttatatcgtcgcgtaattaaccgtaacaaccgttta
aaacgtttattagatttaatcgcaccagatattatcgtacgtaacgaaaaacgtatgtta
caagaatctgttgatgcgttattagataatggtcgtcgcggtcgtgcgattacgggttct
aaccgtcgtccattaaaatcgcttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgttgactattcaggccgttccgtaatcactgtaggtcca
tacttgcacttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctacgcaaaattagaaagccgtggttatgcaacaaccatcaaagcggctaagaaa
atggttgagcgtgaagacgcgatcgtttgggatatcttggcagaagttattcgtgagcac
ccaattctattgaaccgtgcaccaacacttcaccgtttgggtattcaagcatttgaacct
cttttaatcgaaggtaaagcaatccaattacacccactcgtttgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggttcacgtaccattaacccttgaagctcagttagaa
gctcgtgcgttaatgatgtcaaccaataacgtactttcaccagcaaacggtgatcctatt
atcgttccatcacaagacgtggtgttgggtctttactatatgacccgcgaaaaagtaaac
ggtaaaggcgaaggcatgttattgcaagatcctcgcgaagctgaaaaagcatatcgcaca
ggtgaagcagaattgcattctcgcgttaaagtacgtattaccgaatatgtgaaaaatgaa
gctggcggattcgaagagaaaaccacattaactgataccactatcggtcgtgctattctt
tggatgatcgcaccaaaaggtatgccttattcattgttcaaccaaacattaggtaaaaaa
gcgatttctaaactcatcaacgaagcataccgtcgtttaggtttgaaagaagcggtaatg
tttgctgaccatattatgtataccggttttgcttatgcggctcgttcaggttcttctgta
ggtatcgacgatatggttattccagagaagaaatacgaaattatttctgctgcggaagcc
gaagttgccgaaattcaagaacaattccaatccggtcttgtgactgcaggcgaacgctat
aacaaagtgatcgatatttgggctgcagcaaatgaacgtgtagcaaaagcgatgatggaa
aacttgtctcaagaagaagtcatcaatcgtgaaggtaactcggaaaaacaagcgtctttc
aacagtatctttatgatggcggattctggtgcgcggggttctgcagcacagattcgtcag
ttagcgggtatgcgtggcttgatggctcgtccggatggttcgatcatcgaaactccaatt
actgcaaacttccgtgaaggtttgaacgtacttcagtactttatttcaacccacggtgcg
cgtaaaggtttagcggatactgcattaaaaacagcgaactccggttacttaacccgtcgt
ttagtggatgttgcccaagacttggtgattgttgaagacgactgtggtacacacgaaggc
ttagtggtgaccccattaattgaaggtggcgatgagaaagtgccattgcgcgaattagtg
ttaggtcgtgtcgctgcagaagacatctataaaccaggtacggaagaagtattaatcgcc
cgtaacactttactagatgaaaaactttgtgatgtgttagatgctaactccgtagacagc
gtgaaagtccgttctgttgtaacctgtgataccgactttggtgtgtgtgcgaaatgttat
ggtcgtgacttggcgcgcggtcacctgattaaccaaggtgaagctgtaggggttatcgct
gcgcaatctatcggtgagccaggtacacagttaaccatgcgtacgttccatatcggtggt
gcggcttccgcagcagcgaaagaatctagcgtacaaattaaaaacaacggtactttacac
ctcgttaatgcgaaattcgtgactaacgatgaaggtaaattagtgttaacttcccgtaat
actgaattaaccgttactgatgcgtttggtcgtacgaaagaacactataaagtgccttat
ggtacggtgttaaataaagctgacggtcaagaagtggcagcaggtgaaactgttgcaaac
tgggatccacataccatgccggtagtctctgaagtttccggttttgtgaaatttgtagat
atcgtggatggtttaaccgtaactcgtcaaactgatgaattaaccggtctttcttctatt
gtggtacaagatgtgggtgaacgtgcaaccgcaggtaaagatttacgtccaaccatcaaa
ctagtagatgccaaaggtaacgatattttcttacctgaaaccgatgttatcgcacaatac
ttcttaccgggtaaagcaatcgtaagcttagatgatggtgcagaagtaaaagtgggtgaa
ccgcttgctcgtattccacaagaatctgtgggtactaaagatattaccggtggtcttccg
cgcgttgctgatttattcgaagctcgtaagccgaaagaacctgcaatcttggcagaaatt
tccggtatcgtatccttcggtaaagagaccaaaggtaaacgccgtttattaatcactcca
actgagggtgaaacctacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgagatggtacaacgtggtgatgtgatttctgatggtgctgagacaccacatgatatc
ttacgcttacgtggtgtacgcgcggtaactgaatatatcgtgaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgataagcacattgaagtgattgttcgtcaaatg
ttacggaaagcggtgatcaccaaagcttatgacagcgaattcctcgaaggggaacaagtt
gaagtggctcgcgtgaaaattgttaaccgtaaacgtgaagcggaaggtaaaccaccagtt
gagttcgaacgtgaattacttggtattaccaaagcgtccttggcaacagaatccttcatt
tctgcggcatcgttccaagaaaccactcgcgtgcttactgaagccgctgtggcaggtaaa
cgcgatgaattgcgtggtttgaaagagaacgttatcgttggtcgtttaattccagccggt
accggttttgcgtatcaccaaaatcgtcacaaaaaccgtttggttgacgatgttgtcgtg
aaattatcggaagatgatgaacaggcaattgccgatgagttcgtgatgagtgccgatgat
gccaccagcaatttggcagaaatgctgaatatggcggatgatgcggaataa
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integrated database retrieval system
