Haemophilus pittmaniae: NCTC13334_01338
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Entry
NCTC13334_01338 CDS
T06001
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hpit
Haemophilus pittmaniae
Brite
KEGG Orthology (KO) [BR:
hpit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpit03016
]
NCTC13334_01338 (rnb)
Enzymes [BR:
hpit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC13334_01338 (rnb)
Transfer RNA biogenesis [BR:
hpit03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC13334_01338 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
PilZ
DUF2274
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
SNV80413
LinkDB
All DBs
Position
1:complement(1345363..1347342)
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AA seq
659 aa
AA seq
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MFQDNPLLAQLKQQIHDSKEHVEGVVKGTDKAYGFLECDKKSYFLAPPAMKKVMHGDKIK
ATIEKQGDKEQAEPYELIEPMLTRFIAKVRFNKDNKLQVLVDHPNINQPIGAQQAKSVKE
ELQEGDWVVANLKTHPLRDDRFFYATINQFICRADDELAPWWVTLARHEQSRHPVQGAES
YEMLDQQTREDLTALHFVTIDSESTLDMDDALYIEPIEQNGTQTGWRLVVAIADPTAYIA
LDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLMANETRPALVCYIETDLEGNITA
KPHFVSAYVQSKAKLAYNKISDYLEQVPDAWQPETPEIAQQIDWLHQFTLARIQWRKTHS
LLFKEKPDYSFILAENGKVKEIKAEYRRIANQIVEESMIIANICAAQFLAEHAKTGIFNT
HAGFDKKFLENAHNFLMANLANEENQAELTERYSVENLATLKGYCQMRHDIEPIEGDYLE
FRLRRYLTFAEFKSELAPHFGLGLEGYATWTSPIRKYSDMVNHRLIKAVLTQQACEKPQD
EVLARLQEARRQNRLVERDIADWLYCRYLADKVAEGAEFTAEVRDVSRGGLRLELLENGA
SLFVPASTLHPNKDEMQVNADELALYIQGERRYKIGDLVKVKLTEVREETRSIIGQLII
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccactactcgcgcaactcaaacaacaaattcatgacagtaaagaa
cacgttgaaggcgtggtaaaaggcaccgacaaagcctacggctttttagagtgcgataag
aaaagctactttttagctcctccggccatgaaaaaggttatgcatggcgacaaaattaaa
gccaccattgaaaaacaaggcgataaagaacaagctgagccgtatgagttaattgagccg
atgctgacacgctttatcgctaaagtgcgctttaacaaagacaacaaactgcaggtatta
gttgatcatccaaatatcaaccaacccattggtgcacaacaagctaaatctgtaaaagaa
gaattacaagagggtgattgggttgtagcaaatttaaaaacccacccattacgcgatgat
cgctttttctatgccaccatcaatcaatttatctgccgtgctgacgatgaattagccccc
tggtgggtcacgctggcacgccatgaacaatctcgtcatcctgtgcaaggtgcagaaagc
tatgagatgttagatcaacaaacacgtgaagatctgaccgcacttcattttgtcactatt
gactctgaaagcacactggatatggacgatgccctttacatcgaacctatcgagcaaaat
ggtacacaaaccggctggcggttagtcgttgccattgcggatcccacagcttacattgca
ttagattcacaaattgaaaaagatgcgaaacagcgttgtttcaccaattatttgccaggc
ttcaacatcccaatgttgccacgtgaattatctgatgaattatgttcattaatggcaaat
gaaactcgtcctgcgttagtgtgttacattgaaacggatcttgaaggtaacatcacggct
aaaccgcattttgtgtccgcttatgtgcaatctaaagcaaaattagcctataacaagatt
tcagattatttagaacaagtaccggatgcatggcaaccggaaacacctgaaattgcccag
caaattgattggttacatcaatttactctagcgcgtattcaatggcgtaaaacccattca
ttgttatttaaagagaaaccagattactcctttattctcgcagaaaatggcaaagtgaaa
gaaattaaagcggaatatcgtcgtattgcaaatcaaatcgtggaagaatccatgattatt
gccaatatctgtgctgcacaattcttagctgagcatgccaaaacagggatttttaataca
cacgcaggttttgataagaaattcttagaaaatgcgcataatttcttaatggcaaattta
gccaatgaagaaaatcaagctgaacttactgaacgttattcggtggaaaatttggcaacc
ttaaaaggttattgccaaatgcgtcatgatattgaaccgattgaaggtgattatttagaa
ttccgtttacgtcgttatttaacctttgcggagtttaaatccgaactcgctccacatttt
gggcttggattagaaggttatgcgacatggacatcgcctatccgtaaatattccgatatg
gtgaaccatcgcttaatcaaagcagtgctcacacagcaagcttgtgaaaagccacaagat
gaagttcttgcgcgcttacaagaagcccgtcgtcaaaatcgtttagtcgaacgggatatc
gccgattggttatattgtcgttatttggcggataaagtggccgaaggtgctgaatttact
gctgaagtacgcgatgtaagccgtggtggattacgcttggaactgttggaaaatggcgca
tccctgttcgtaccagcctccacattgcatccaaataaagatgaaatgcaagtgaatgct
gatgaattggcactgtatattcaaggggaacgccgttacaaaatcggcgatttggtgaaa
gtgaaacttactgaagtacgagaagaaactcgcagtattatcggtcagttaatcatttaa
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