Haemophilus pittmaniae: NCTC13334_01431
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Entry
NCTC13334_01431 CDS
T06001
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hpit
Haemophilus pittmaniae
Brite
KEGG Orthology (KO) [BR:
hpit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpit03019
]
NCTC13334_01431
Enzymes [BR:
hpit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC13334_01431
Messenger RNA biogenesis [BR:
hpit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC13334_01431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
AAA_30
NACHT
ResIII
AAA_25
FtsK_SpoIIIE
TsaE
Fis1_TPR_N
AAA_23
Motif
Other DBs
NCBI-ProteinID:
SNV82271
LinkDB
All DBs
Position
1:1451358..1455272
Genome browser
AA seq
1304 aa
AA seq
DB search
MKNKSVKQALNPLQQSLFSKLNGIMQVDQRRLSARIHGIGKIKSQEAQQAVAAEIQLQIE
QAQLRVENRKTAVQNPIAFPESLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMC
LELGFGNLGMIGHTQPRRIAARSVAVRIAEELETELGGLVGYKVRFNDQISDDTQIKLMT
DGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEDDDQDQLQGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTV
PGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDF
NSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLLEELGAFET
VRTKAGEKRQLTAVGRQLSQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSIQDPRERPQ
EKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLNYLRIREWQ
DIYHQIRLTVREMGLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIF
PNSVLFKKQPKWVIAAELVETSKLWGRMVAEIEPEWIEPLAEHLTKKSYSEPRWSKSRGS
VIADEKVSLYGVPIVAARPVNYGAIDPTVSRTIFIQSALVEGDWHTKHKFFKENQRLVRE
VEELEHKSRRRDILVDDRTLFEFYDQRIGTEVVSQKHFDTWWKKAQQKDPELLNFERSFL
INDDAEQVSKLDFPNFWHQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQI
PGLREELVIALIKSLPKSYRRNFVPAPNYAQAFLNRAVPLEKPLLDTLIYELRRMTGVTV
EAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNLKDRVQESISAVADDGIEQS
GLHIWSFAELPQCYEQKQRGFSVKAFPAIVDEKDAVGIKLFETEFEQAVAMQQGLRRLLL
LNVPSPIKYLHEKLPNKAKLGLYFTPFGRVLDLIDDCIACAVDKLIADFGGFVWDEAGFE
KLRDFVRENLNEVTVDIAQKVEQILSLNHALNQRLKGKMDFTMAFAFSDIKAQLSGLIYP
GFVQKSGYDRLPDLQRYLQAVDKRIDKLAQDVNRDRAAMLRVEQVQQAYQQLLAKLPKSK
PISDEVAEIRYMIEELRVSLFAQQLGTKYQVSDKRILNLIDQIQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaatcagttaaacaagcattaaacccactacagcaatctcttttctcgaaa
cttaacggaatcatgcaggtggatcaacgtcgtttatccgctcgtattcatggtattgga
aaaattaaaagccaagaagcacagcaagctgtggccgctgaaatccagctgcagattgaa
caggctcaattgcgtgtagaaaatcgtaaaactgcggtgcaaaatcccattgcttttcca
gagagtttgccggttagccaacgcaaagcagaaattcaaaaactgctttctgaacatcag
gtcattgtagtggccggggaaaccggttcaggtaaaaccacccaattgccgaaaatgtgt
ttggagctgggctttggcaatttgggcatgattggccatactcaaccgcgccgtattgcc
gctcgttcggtggcggtgcgtattgcggaggagttagaaacggagcttggcggtttagtc
ggttataaggtccgttttaacgatcaaatcagtgatgatacacaaatcaagttgatgacc
gacgggatcctgttagcggaaattcaaaacgatcgtttcctcaatcaatattcttgtttg
attatcgatgaagcccacgaacgtagcctaaataacgattttattctcggttatctgaaa
caattactgccacgtcgtcgtgatttaaaacttattatcacctccgcgaccattgatgtg
gaacgcttttccaaacatttcaacaatgccccgattattgaagtttcgggcagaacctat
cctgttgaagtgcgttatcgcccagtagtggaagacgacgatcaagatcaactgcaaggc
attctcaacgcagtggatgaactgcaagcagaaggccgtggcgatatcttgatctttatg
aacggtgagcgtgaaattcgcgataccgctgaagccttacaaaaacaaaatctaaaacac
acggaaattctaccgctctttgcccgtttgtctgcgcaagaacaaaacaaaattttccat
ccgagcggattaaatcgcatcgtgttggcgaccaacgtcgcagaaacctcattgaccgtg
ccgggcattaaatatgtgattgatccaggtactgcgcgaatctcccgttatagctatcgc
accaaagtacaacgtttaccgattgaacctatttcacaggcatccgctaatcagcgtaaa
ggccgttgtggtcgtgtgagcgaggggatttgtattcgtttatattcggaagatgatttt
aattctcgtcctgaatttaccgatcctgaaattctacgcaccaatttagcctccgttatt
ttgcaaatgacggcattgggtttggatgatattgaagccttcccatttgtggatgcgccg
gataaacgccatattcaagatgggataaaactgttggaagaattaggtgcgtttgaaacc
gttcgcactaaagcgggtgagaaacgtcaattaaccgcagttggtcgtcaattatcgcaa
ctcccagtagatccacgtttggcgaaaatgttgctaagtgctgtttcacaaggtgccttg
catgaagtaatgattattgtcgccgcattatccattcaagatccgcgtgagcgtccacaa
gaaaaacagcaagcttccgatgaaaaacatcgccgttttgccgataaaaaatcggatttc
ttggctttcctcaatctttggcgttatctgcaagaacaacaaaaagaattgagtaaaaac
caattccgccgccaatgccaaaaggatttcttaaattatttacgcattcgtgaatggcag
gatatttatcatcaaattcgtttaaccgtccgtgaaatgggcttgccgattaattccgaa
aaagcagaatatcagcaaattcataccgctctgttaagtggcttgctttctcatattggt
ttaaaagaagcggaaaaacagcaatatcttggcgcacgtaatgcccattttgcaattttc
cccaattctgtgcttttcaaaaaacaaccgaaatgggtaatcgctgccgagttggtggaa
acctccaaactttgggggcgcatggtggcagaaatcgagccagaatggattgagccgctt
gccgagcatttaacgaaaaaatcctattcagaaccgcgctggtcgaaatcccgtggttcg
gtgattgccgatgaaaaggtaagcctctatggcgtaccaattgtcgcagcgcgacctgtg
aattatggtgcaatcgatccaacggtgagccgcactatttttattcaatccgccctagtg
gaaggggattggcataccaaacataaattcttcaaagaaaatcaacgactcgttcgagaa
gttgaggagttggaacacaaaagccgccgccgcgatattttggtggacgaccgtacgctt
tttgaattttacgatcagcgtattggcacagaagtggtttcccaaaaacattttgatacc
tggtggaaaaaggcgcagcaaaaagatcctgaattgcttaattttgaacgctcattcttg
attaatgatgatgcagaacaggtgagcaagctggatttcccaaatttctggcatcaaggc
aatttaaaactcaaactgacctatcaatttgaaccgggtaccgatgcggacggcgtgacc
gtgcatattccattaccgttgctcaaccaagtggaaatgacgggttttgattggcaaatt
ccgggtttgcgtgaagagctagtgattgcgctgattaaatcgttgccgaaatcctatcgc
cgtaattttgtgccggcacctaattatgcccaagcttttttaaatcgagccgtgccgttg
gaaaagccattattggatacgctaatttatgaattacgtcgtatgacgggcgttactgta
gaagcggaacattggaattgggaacaaattccaagccatttaaaaatgacgttccgcgtg
gtggatgaaaacggcaagaaaattgcggaatccatgaatttggatgagctgaaattcaac
ttaaaagatcgtgtgcaagaaagtatttctgctgtggccgatgatggcattgaacaaagt
ggcctgcatatttggagctttgcagagctgccacaatgttatgagcaaaaacaacgcggt
ttcagcgtcaaagccttcccggctatcgtagatgaaaaagatgcggtgggtataaaactg
tttgaaacagagtttgagcaagcggtggcgatgcaacaaggtttacgccgcttgttgcta
cttaatgtgccatcaccgattaaatatctgcatgaaaaattgccgaataaggctaaattg
gggctgtattttactccgtttggtcgagtgttggatttgattgatgactgtatcgcttgt
gccgtggataaactgattgccgattttggcgggtttgtatgggatgaagctggctttgaa
aaattgcgtgatttcgtgcgggaaaacctcaatgaagtgaccgtagatattgcacagaaa
gtagagcaaatcctctcccttaaccatgccttaaaccaacgtttaaaaggcaaaatggat
ttcaccatggcctttgccttttccgatattaaggcacaattaagcggactgatttatcca
ggctttgtgcaaaagagcggttatgatcgcctacctgatttacaacgttatctgcaagcc
gtagataaacgtatcgataaactggctcaagatgtaaatcgtgatcgtgcggcaatgcta
cgcgtggaacaggtgcaacaggcttaccaacaattgctagctaaactgccgaaatctaaa
ccaatttccgatgaagtcgcagaaattcgctatatgattgaggaattacgagtgagttta
tttgcgcagcagttaggcacgaagtatcaggtgtcggataagcggattttgaatttgatt
gaccaaatacaataa
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