Haemophilus pittmaniae: NCTC13334_01618
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Entry
NCTC13334_01618 CDS
T06001
Symbol
topA_2
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpit
Haemophilus pittmaniae
Brite
KEGG Orthology (KO) [BR:
hpit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpit03032
]
NCTC13334_01618 (topA_2)
03400 DNA repair and recombination proteins [BR:
hpit03400
]
NCTC13334_01618 (topA_2)
Enzymes [BR:
hpit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC13334_01618 (topA_2)
DNA replication proteins [BR:
hpit03032
]
Prokaryotic type
DNA Topoisomerases
NCTC13334_01618 (topA_2)
DNA repair and recombination proteins [BR:
hpit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC13334_01618 (topA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_LysW
DUF7351
Toprim_2
DUF4795
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
SNV84564
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Position
1:1647821..1650502
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AA seq
893 aa
AA seq
DB search
MLDFDNVSLQYSGQFYRSFVDLGNQMSKSLVIVESPAKAKTINKYLGSQYVVKSSVGHIC
DLPAAGTSTGEKAKPVSTKGLSTEEKTKIKAEKDRAALVKRMGIDPYHDWKANYQILPGK
EKVVAELKSLAKKSDHVYLATDLDREGEAIAWHLREVIGGDDSRFSRVVFNEITKKAIEK
AFQHPAHINMDQVNAQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLVVERER
EIKAFQPEEFWEIEALTQTSKKEDLRLDVVQYKGKKFEPKNEKEAQSAVDFLTQSHYVVT
DLETKPTGSKPRAPFITSTLQQTASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSQ
DALNMARSYIESHFGKEYLPAKPNFYSSKENAQEAHEAIRPSDVKLLADHLSGMDKDAVR
LYDLIWRQFVACQMPAAQYDSTTVTVMAGDYELKAKGRILRFDGWTKVLPQLGKNPEDQI
LPAVSLNETLALKMVSPSQHFTKPPARFTEAALVKELEKRGIGRPSTYAAIISTIQERGY
VRTENRRFYAEKMGEIVTDRLNQSFTDLMSYDFTANMENVLDQIASGEKNWKTELNQFFK
DFSTQLSTAELDELEGGMKPNSLVLTDIDCPTCGRKMAIRTASTGVFLGCSGYALPPKER
CKTTINLIPEAELLNVLDDASETKALMDRKRCPKCGTAMDSYIIDPHRKLHICGNNPNCD
GYLVEQGQFKIKGYDGPIVECDKCGADMHLKLGRFGKYMGCTSCDNTRKILKNGEVAPPK
EEPVHFPELKCEKSDAYFVLRDGASGVFMSAHNFPKSRETRPAKVAELALYRDRLPEKLR
YLADAPQKDPEGNEAIIRFSRKEKHQYVTSEKNGKATKWIVDYLDGKWVERKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcttgattttgacaacgtaagtttgcagtatagcggccaattttacagaagttttgtg
gatttaggtaatcaaatgagtaaatctttggtgatcgtggagtcaccggcgaaagcaaaa
acgattaataaatatttaggaagccaatatgtggtgaaatccagcgttgggcatatttgt
gatttgccagcagcaggcactagcaccggcgaaaaagctaaaccagtttcaacaaaaggc
ttaagcactgaagaaaaaacaaaaataaaagcagaaaaagaccgcgcggccttagttaaa
cgcatgggaatcgatccttatcacgattggaaagccaattaccaaattttacccggcaaa
gaaaaagtggttgccgaattaaaatcccttgctaaaaaatccgaccatgtttatctcgca
accgacttggatagagaaggagaagccatcgcttggcatttacgcgaagttattggtggc
gatgatagccgctttagccgcgttgtatttaatgagattacgaagaaagcgattgaaaaa
gccttccagcatcctgcgcacattaatatggaccaggttaatgctcagcaaacccgtcgt
ttcttagaccgcgtggtaggctttatggtatccccattattatggaaaaaggtagcccgt
ggtttatctgccggacgcgtgcaatccgttgccgtgaaattggtggtagagcgtgaacgt
gaaattaaagcattccaaccggaagagttttgggaaattgaagcgctaacccaaactagc
aagaaagaagacctgcgcttggatgtggtgcagtataaaggcaagaaatttgagccgaaa
aatgaaaaagaagctcaaagtgcggtcgatttcttaacccaatcacattacgttgtcacg
gatctagaaacaaaaccaacaggttctaaaccaagagcaccatttatcacttcaacctta
caacaaactgcaagcacgcgtttaggctttggggtgaagaaaaccatgatgttggcacaa
cgtttatatgaagccggttatatcacttatatgcgtaccgactccactaatttaagccaa
gatgcattaaatatggcgcgcagttatattgaaagccattttggcaaagagtatttgccc
gctaaaccgaatttctattccagtaaagaaaatgcacaagaagcacacgaagcaattcgt
ccttctgatgtcaaactgcttgcagatcatttaagtggcatggataaagatgcggtgcgt
ttatatgatttaatctggcgtcaatttgtggcttgtcaaatgccagccgcacaatatgac
agtactacggttaccgtaatggctggcgattatgaattgaaagccaaaggccgtatttta
cgctttgatggttggacaaaagtgttgccacaattaggtaaaaatccggaagaccagatt
ttaccggctgtcagtttaaatgaaacattagcactaaaaatggtttcgccaagccaacac
ttcaccaaaccgccagctcgttttaccgaagctgcattggttaaagaattagaaaaacgc
ggtattggtcgcccttccacttatgctgcaattatttctaccattcaagaacgcggttat
gtgcgcactgaaaatcgtcgtttctatgcagagaaaatgggcgaaattgttaccgatcgc
ttaaatcaatcttttacagatttgatgagctacgatttcaccgccaatatggaaaacgta
ttggaccaaattgcatccggtgaaaagaattggaaaaccgaattaaatcaattcttcaaa
gatttctctacgcaactttctactgcagaattagatgagctagaaggtggaatgaaacca
aatagcctcgtactcaccgatattgattgcccaacttgtggccgaaaaatggctattcgt
accgcaagtaccggtgtcttccttggttgttctggttatgcattaccaccaaaagagcgt
tgtaaaacgacgattaatctcattccagaagcagaattattaaatgtgttagacgatgcc
tctgagaccaaagctttgatggatcgtaaacgttgtccgaaatgtggtacggcgatggat
agctacatcattgatcctcatcgtaaattgcatatttgcggtaataatccgaactgcgat
ggttatttggtggaacaaggccaattcaaaattaaaggctatgatggtccgattgtagaa
tgtgataagtgcggtgcagatatgcacttgaaactaggtcgttttggaaaatatatgggc
tgtaccagttgtgataacacccgcaagattttgaaaaatggtgaagttgcaccaccaaaa
gaagaaccggttcatttccctgaactaaaatgtgaaaagtctgatgcatattttgtatta
cgtgatggcgcaagtggtgtgtttatgtctgcacataacttccctaaatcgcgtgaaaca
cgcccagcaaaagttgctgaattagcactttatcgtgatcgtttaccggaaaaattacgt
tatttagctgatgctccacaaaaagacccagagggtaatgaagccattatccgtttcagc
cgtaaagaaaaacatcaatatgtaacttctgaaaagaatggcaaagcgactaaatggatt
gtggattatcttgatggtaaatgggtagaacgaaagaaataa
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