Vreelandella piezotolerans: GYM47_00910
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Entry
GYM47_00910 CDS
T07036
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYM47_00910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpiz03021
]
GYM47_00910 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpiz03400
]
GYM47_00910 (rpoC)
Enzymes [BR:
hpiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYM47_00910 (rpoC)
Transcription machinery [BR:
hpiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYM47_00910 (rpoC)
DNA repair and recombination proteins [BR:
hpiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYM47_00910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QJA22778
LinkDB
All DBs
Position
201545..205759
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINTLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGHASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVDEETGERSEHRRLYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVVDRDGNDVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVVDPSTEEVLIPRNTLLDEKWCASLDTMGVDEIVVRSTITCDTAHGVCSACY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGAVVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LKDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGATIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESAILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDDL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtccttcggcgaggtgaagaag
cctgagaccatcaactaccgtacctttaagccggaacgggatggtctgttctgtgccaag
attttcggcccggtcaaagactacgagtgcttgtgcggcaaatataagcgcatgaagcac
cgcggcatcatctgtgagaagtgtggtgtcgaagtcaccaaggcggccgtgcgccgtgag
cgcatgggtcacatcgaactggcatcgccggtggctcacatttggtttttgaaatccctg
ccgtcgcgtatcggcatgttcctcgatatgacgctgcgtgatatcgagcgcgtgctctat
ttcgaaagcttcgtggtcatcgaccccggcatgaccacgctggagcgtggtcagctgctc
aacgacgagcagtacttcgaagccttggaagagttcggcgacgacttcgacgcccgtatg
ggggccgaagccgttcaggagctgctcaaagacatcgatctggaagaagagatcaacacg
ctgcgtgaagagattccgcagaccaactctgaaaccaagatcaagaagctctccaagcgc
ttgaagctgctggaagcgttctaccactccggcaatgcgccggcgtggatggtcatggaa
gtgctgcccgtactaccgccggacctgcgtccgttggtgccgctagacggtggccgtttc
gcgacctcggatctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtctgctcgacctcaatgcgcccgacatcatcgtgcgtaacgagaagcgtatgctgcag
gaagcggtcgacgcactgctggataacggccgccgcggccgtgccatcacgggctctaac
aaacgcccgctgaaatccttggccgacatgatcaagggtaagcaggggcgtttccgtcag
aacctgctgggtaagcgcgtcgactactccggccgttcggtgatcaccgtgggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctcgagctgttcaagccgttc
atctactccaagctgcagtcgctgggccatgcgtccacgatcaaagccgcgaagaagatg
gtcgagcgcgagctgccggaagtatgggacatcctggccgacgtcattcgcgaacacccg
gtactgctcaaccgcgcgccgacgctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggtaaggcgattcagctgcacccgctcgtctgtgcggcctacaacgctgac
ttcgacggtgaccagatggcggttcacgtaccgctgacgctggaagcccagctcgaagcc
cgcgcgctgatgatggcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtaccgtcgcaggacgttgttctgggtctgtattacatgacccgtgaaaagatcaacgcc
aagggcgaaggcatggtgttctccgacctcaatgaggtagagcgcgccttcggcacacag
tccgtgtcgctgcatgcccgcgtcaaggtgcgtctggacgaagtggacgtcgacgaagag
actggcgagcgctccgagcaccgccgtctttacgacaccaccgtcggtcgtgcgctgctg
ttccgcattctgccggaaggcgttccgttcgcgctgatcgatcagccgatgaagaagaag
gcgatttccagcctgatcaacgaggtataccgtcgtgcggggctgaagcccactgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctggcgacctggtccggtgcctcgatc
ggtgttaacgacttcgttatccccgatgccaagaccgagatcgttgatgccgctgaagca
gaagtcaaagagatcgaagaccagttctcctctggcctggtaaccgcaggcgagaagtac
aacaaagttatcgatatctggtccaaggcgaacgataaagttgccaaggcgatgatggtg
ggtatctcgaaagagacggtcgttgatcgtgatggtaacgacgtcgagcaagactcgttc
aacagcgtcttcatcatggccgactccggtgctcgtggtagtgccgctcagatccgtcag
ttggcgggtatgcgtggcctgatggccaagccggatggctcgatcatcgaaacgccgatc
gtggccaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggcgca
cgtaaaggtctggcggatacggcactgaaaacggccaactccggttatctgactcgtcgt
ctggtagacgttgctcaggacttggtgattaccgagactgactgtggcaccgaaaacggc
ctgacgctgcacccgatcatcgagggtggcgatatcatcgtaccgctgtctcagcgcgta
ctgggtcgtgtcgtcgcgcaggacgtggtcgatccgagtaccgaagaagtactgattccg
cgtaatacgctgctcgacgagaagtggtgtgcctcgctggacaccatgggcgttgacgaa
atcgtcgtacgctccacgattacctgtgataccgctcacggcgtgtgttccgcctgttac
ggacgtgaccttgcccgtggccaccaggtcaacatcggtgagtccgtcggtgtcatcgcc
gcacagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcagcatcgcgttcgtctgcggtcgacagcgttcaggtcaagcacggcggtaaagtgcgc
ctgcataacatcaagcacgttgagcgtgccgacggcaaactggtcgtggtctctcgttcg
agcgccttggcggttgccgacgatcacggtcgtgagcgtgagtactacaagctgccctat
ggtgccgagctctccgtgcgcgatggcgacgtggtcgatgccggtgctgtcgtagccaag
tgggatccgcacacccacccgatcattgcggaagtggaaggtaaggcgcaattcatcgac
ctcgatgaaggtgtcaccatgcaccgcagtgtcgatgagatgaccggtctgtcgtccatc
gaagtgatcgagtcggccgcacgcccaatggcgggtcgtgacaagcgcccgatggtgatg
ctgaaagatgccgctggtgagtacgtatccgtgtccggttccaatacgccggttcaatac
ctgctaccgggtaactccatcatctcggtggacgacggtgcgaccatcggtgtaggtgag
gtcgttgcgcgtatccctgtcgaggcgtcgggtaacaaggacatcaccggtggtctgccc
cgcgtggctgacttgttcgaagcgcgtaaacccaaagagtccgctattttggcggaaatc
agcggtgtggtgagcttcggtaaagagaccaaaggtaagcgtcgtttgacgattacgcct
gagtctggcgatccgtttgaggcgctgatcccgaaatggcgtcaaatcgccgtgttcgaa
ggcgagacggtcgagaagggggaggtgatctccgatggcccaagcaacccgcacgatatc
ctgcgtctgctgggtgtcgcggagctggccaagtacatcaccgccgaagtacaggacgtt
tatcgtctgcagggcgtaggcatcaacgacaagcacatcgaagtcatcgtgcgtcagatg
ctgcgcaaggtggagatcaccgattccggcgactctgacttcattaccggcgaccaggca
gaactggtgcgcgtactggagcagaacgagcgtctggagaaagaaggcaagttcccggcc
aagtatcagcgcttgctgctgggtatcaccaaggccagcttggccactgagtcgttcatc
tccgccgcgtcgttccaggaaacgacccgcgtactgaccgaagcagcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtggttggacgtctgattccggcaggt
accggtctgacccatcacgcagagcgtcgtcgcaagcgcgaagacgtagagcgtctgttc
aatccctcggccaccgaggtagagcaggagcttggcgctcagttgaccgccctggattca
gacgacgatctgtaa
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integrated database retrieval system
