Vreelandella piezotolerans: GYM47_01310
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Entry
GYM47_01310 CDS
T07036
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GYM47_01310
09124 Replication and repair
03420 Nucleotide excision repair
GYM47_01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpiz03021
]
GYM47_01310
03036 Chromosome and associated proteins [BR:
hpiz03036
]
GYM47_01310
03400 DNA repair and recombination proteins [BR:
hpiz03400
]
GYM47_01310
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GYM47_01310
Transcription machinery [BR:
hpiz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GYM47_01310
Chromosome and associated proteins [BR:
hpiz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GYM47_01310
DNA repair and recombination proteins [BR:
hpiz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GYM47_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJA22850
LinkDB
All DBs
Position
269058..271319
Genome browser
AA seq
753 aa
AA seq
DB search
MSRYRVAVRTLCDFTAREGDLDHRFTPSPSAQAGIEGHALVAKRRENIAGYEAELPLSGE
YQGLHVSGRADGFDVAANCVEEVKTHRGSLTRMADNQRSLHWAQVKMYGALLCAERDLPH
ITLALVYLNIDSGQETRLTLEASNEELSAFFVDQCQRFLAWAEQEAAHRERRDGWLTTLT
FPHADFRPGQRALAEDVFKAASTGRCLLAQAPTGIGKTLGTLFPMLSAMPRQRLDRIAFL
TMKTPGRRLALDALASLDAPTQPLRVLELVAREKACEYPGTACQGDTCPLARGFYDRLSA
ARQVAVEKSWLDREALREVALAHHVCPYYLGQELARWADVVVGDVNHWFDSHALLHGLAQ
ANDWRVGLLVDEAHNLVERARGMYSAALTQQRLSYLRRQSPPALAKPLARVGRQWQALNK
ETAEHAPERRYHVLEALPTKLVGALHALAGAITDYLVEHPDEVNQALQELLFEALAFCRL
AESFGDHSLCDLEIQGKGRAVLGLRNVIPADFLAPRFERAHCAVLFSATLTPFHYYRNLL
GLPEQSVWREVDSPFVACQLEVQLRTDISTRYHHRVASVTPIVATLAAQYRRTPGHYLAF
LSSFAYLEQVMRAFELAHPEIPAWAQTRSMQEPERDAFLARFAPGGKGIGFAVLGGAFAE
GIDLPGDRLIGAFVATLGLPPFNDFNEALKARLQARFGQGDDYTYHIPGMIKVVQAAGRV
IRSPEDEGVVVLMDDRFAQNKVRALLPRWWQLS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatcgggtggcggtgcgcacgctgtgcgacttcaccgcgcgcgaaggtgat
ctcgaccaccgcttcactccctcgcccagcgcccaagcgggtatcgaggggcacgctctg
gtggccaaacggcgggaaaacatagcgggttacgaggccgaacttcctctctccggtgag
tatcaggggctacacgtgtctggccgcgccgatggtttcgatgtggcggccaactgtgtc
gaagaggtcaagacccatcgcggtagcctaacgcgcatggccgataaccagcggtcgctc
cactgggcgcaggtaaagatgtacggggcgctgctttgcgcggagcgggatttgccgcac
attacgttggcgctggtatacctgaatatcgacagtggccaggaaacgcggctgacgctc
gaggctagcaacgaggaattatcagcgttttttgtcgaccagtgccaacgctttttagcc
tgggccgagcaggaggccgcccaccgtgagcgtcgcgatgggtggctcaccacgctgacc
tttcctcacgcggattttcgccccggccagcgggcactggccgaggatgtcttcaaagcc
gccagcaccgggcgctgcctgctggcccaggcgcccactggtatcggcaaaaccctgggc
acgctgttccctatgctctccgcgatgccccgtcagcggctcgaccgcatcgcctttctc
accatgaaaaccccaggccgccgcttggcgttggatgctttggcgagcttggatgctccc
acgcagccgctgcgtgtgctggaactggtagcccgtgaaaaagcgtgtgagtacccgggt
accgcctgccagggcgatacctgcccgttggccagggggttttacgatcgcttgtctgcc
gctcgccaagtcgcggtagagaaaagctggctagaccgcgaagcactgcgcgaggtagcg
ctggcacatcacgtctgcccctactatttgggccaggagctggcccgctgggccgatgtg
gtcgtgggggatgtcaatcactggttcgatagccatgcgcttctgcacgggcttgcccag
gccaacgactggcgggtgggcctactggtggatgaggcgcataacctggtagagcgcgct
cgtggcatgtacagcgccgccctcacccagcagcgcttgagctatctgcgccgccaatcc
ccacccgccttagccaagccgttggcccgagtgggcaggcagtggcaggcgctcaacaaa
gagacggccgagcacgcaccagagcgccgctaccatgtgttggaggcactgcccaccaag
ctggtgggggcgctgcatgccctggccggggccatcacggactatctcgtggagcatccc
gacgaagtgaatcaggcgcttcaggaactgctgttcgaagcactggcgttctgtcgctta
gcggaatcgttcggcgaccactcgctgtgcgatttggagattcaaggtaagggacgtgcg
gtgcttgggctgcgcaatgtgataccggcggattttcttgccccccgttttgagcgtgcc
cactgtgcggtgctgttttcggccacgctgacgccttttcactactaccggaacctgctg
ggtcttcccgaacagagtgtttggcgtgaggtagactcgccgttcgtggcgtgccaacta
gaggtgcagttacgcaccgacatttccacgcgctatcaccatcgtgtggcgtcggtaacg
cccatcgtggctaccctggcagcgcagtaccggcgcacgccgggccactatttggccttt
ttaagcagttttgcatacctagaacaggtgatgcgtgcgttcgagttggcgcaccctgag
attccggcttgggcgcaaacacgcagtatgcaggaacccgagcgtgatgcgtttctagct
cgctttgcaccgggtgggaaagggattggctttgccgtattgggcggcgcctttgcggag
ggaatcgatttgcccggtgatcgattgattggtgcctttgtggcgacgctcggcttaccc
cccttcaacgacttcaacgaagcgctcaaggcacggctgcaggcgcggttcggtcaaggt
gatgactatacctatcatatccccggtatgatcaaagtggtgcaagccgccgggcgcgtg
atccgcagccctgaagatgagggggttgtggtgttaatggatgatcgcttcgctcagaac
aaagtgcgcgccttactgccgcgttggtggcagttaagctga
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