Vreelandella piezotolerans: GYM47_04380
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Entry
GYM47_04380 CDS
T07036
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM47_04380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpiz03019
]
GYM47_04380
03009 Ribosome biogenesis [BR:
hpiz03009
]
GYM47_04380
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM47_04380
Messenger RNA biogenesis [BR:
hpiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM47_04380
Ribosome biogenesis [BR:
hpiz03009
]
Prokaryotic type
rRNA helicases
GYM47_04380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
QJA23401
LinkDB
All DBs
Position
959340..961052
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLDMQRREPQVLVLAPTRELAQQVAVSFSRYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRVIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRLVRVDGGAKLEALS
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERAPRDGAPGKPGGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDRAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctggctctattgcctgccgtt
ctgtctgctgttgaagcacagggctacgaaactccttcacccatccaggcgcagaccatt
cctgcgttgctggaaggtcgcgatatgctgggccaagcgcaaacgggtaccggcaaaacc
gctgctttcgcattaccgctgctgtcgcgtctcgacatgcagcgtcgcgagccccaggtg
ctggtgcttgcgccgacccgcgaactggctcaacaggtcgccgtctcttttagccgttat
ggccaaaaccttcaggggttggaagtggctaccctctgcggtggtcaagagtaccgtgaa
cagctaggtgcgttgaagcgtggcgcacaagtggtcgttggcacaccgggccgagtgatc
gaccacttggatcgcggcagcctgaaattggacggtctctccgcactggtactggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcaaacgcgtggttgccgatacc
ccgaaagatgcccagcgtgtcttcttctcggccacgctgccgacggaaatcgagcgcatc
gtcaaccgttatttggtcaacccggtgaaggtggcgatcgagtcgcgcacgaccacaggt
gaaaacatcgagcagcgcctcgtgcgtgtcgacggtggtgccaagctggaagcgctgtcg
cgtattctcgaagtcgagccggtcgatgccgctatcgtcttcgtgcgcacccgtgcggcc
tgtaccacgctggtcgagcagttgaccgctcgtggcgtcaacgccgctggcctatcgggt
gatttggatcagagcctgcgcgagcgcaccattacccgcttgaagcgtggcaaggtcgat
gtgttgatcgcgaccgatgtggcggcccgtggcctcgacgttccgcgtatcacccacgtg
atcaactacgacctaccgcaagatgcagaagcctacacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggcatcgcgattacgttcgcgggtttccgtgaaggccgcaaagtg
ggctggatggagcaggccaccggtcagaaaatgaccgaaatgccgctacctgacgaagcc
gctatccgcgctcaccgtgacgacgtattccatcaccgcgtggtggctgcactgaccaaa
ggcgctgaagagcagcgcgccctggtcgagcgcctggtggaagaggggcatgacgccgtt
gagctggcctgcgcgtttgccgccatggcccgtgctgacgaagcgccgattggtcgtctt
caggcaccgcgcaaagagcgtgccccgcgcgatggcgcaccgggcaagccgggtggtgcc
cgccgcgagcgctccagcgcgcccagcgaaggcatgacccgctaccgcgtctcggtaggc
cataaagacggcgtgaagccgggccaactggtcggcgcgctggcgaacgaaggtggtatc
gaaggcgcacgtatcggccgtatcgatatccgtaacgccttctccgtggtcgagctgccc
agcgggttgccctccacgattctggcgaaaatggcccgcgcccgtgtggccggtcgcccg
ctggaaatcagcgaagaccgtgcgccggagcgcgccccgcgccgtcgtcgtgacgatggc
gatgccccggttcgccgtcgcgaacgcgcataa
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