Vreelandella piezotolerans: GYM47_06365
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Entry
GYM47_06365 CDS
T07036
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hpiz
Vreelandella piezotolerans
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpiz03019
]
GYM47_06365 (hrpA)
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GYM47_06365 (hrpA)
Messenger RNA biogenesis [BR:
hpiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GYM47_06365 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
APHB_HrpA
AAA_22
WHD_HA2
DEAD
AAA_19
nSTAND_NTPase5
NACHT
T2SSE
nSTAND3
AAA_25
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
QJA23758
LinkDB
All DBs
Position
1387344..1391345
Genome browser
AA seq
1333 aa
AA seq
DB search
MTTDTHSSRIDTLQDNASSLATLKASLDHVMRRDQERLSRRVAGLRRRQRENKPIDRGLN
EVEREVDQAKQLLAQRESLRVTLDYPAELPVVERREDILAAIRDHQVVVVAGETGSGKTT
QLPKMCLELGRGRKGLIGHTQPRRLAARSVAGRLAEELSVPLGEQVGYQVRFNDQSSPST
LVKLMTDGILLAETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIIT
SATIDVERFAAHFGTPETPAPVVEVSGRTFPVDVHYRPLARSDEDEEDRTLQEGIVHAVR
EIETIEREKGWLHGPRDVLVFLPGEREIRETADTLRRADLKGTEILPLYARLSNEEQNRV
FAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPVSQASANQ
RKGRCGRIAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEDFPFVD
PPDSRFVKDGFRLLFELGAVNEKQQLSTLGRKLAKLPIDPRLARMVLAGAERGCLRDVLI
VVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIDNARDALSGNQLRRW
CREHYINYLRMREWHDTFRQLRQLLRDMDIEVPAPLPRDENESEEQAKQARRKTSGKLHQ
ALLSGLLSHLGTLLENREYLGARNRKFMIHPGSGLAKKTPKWVMAFELIETTKLFARTVA
KIDPQWIEPQAEHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGPIAPQES
RELFIRRALVEGEFQTKGAFFAHNRALIDEVEALEDRARRRDILVDEETLFAFYDERIPA
DVVNGKGFEHWRKQAERQDPELLKFDIDALKARDAHDVTLAQYPDHLTLSGVAYPVSYHF
DPDAADDGVTLTVPAAMLPQLPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDWV
DAALETLAPDERPLTEALGEFIRRRTGTRVHPDDWRLDLLPPHLIMNVRVVDHAGDMLGQ
GRDVRALEKRFEEAASAGAQALADQASQAPSMDELPQTPLPESRVTTQAGIRVEAYPALV
ANGHHFNVSLFDHPAKATAAHQEGVARLAIAKQPEQVKAIKRLPGVEKCALLFAKVGTKQ
VLVDDLLLAVFTQVVATHPLPRSAPELAERLDRTGDSLIPYAVTLLERVENALKGHLAVT
KVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGEWLDEYPRYTEAALIRLEKAARERG
RDQMMMQDVQALEERFDARRKSERRGNAEDPALVVFGWWLQELRVSLFAQQLGTKMPVSV
KRLEKRWEEITHP
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgacacgcactcatcccgtatcgacaccctgcaagacaacgcttcctcacta
gcaacgctcaaggcgtcgctagatcacgtcatgcggcgtgatcaggagcggctctcgcgt
cgggtggcgggcctacggcggcggcagcgagagaacaaaccgatcgaccgcggtttgaac
gaggtggagcgggaggtcgaccaagccaagcaattgctggcccagcgggaaagcctccgc
gtgacgctggattacccggcagagctgccggtggtagagcgccgtgaggatattctcgcc
gcgatccgtgaccatcaagtggtggtcgtggccggggagacggggtcgggtaaaaccact
cagttacctaaaatgtgtctggagctgggtcgtggccgtaaagggttgattggccatact
cagccacggcgtctggcggcgcgcagcgtcgcggggcgtctggcggaggagttgagcgta
ccactaggcgagcaagtaggctatcaggtccgtttcaacgaccaaagctcaccgagcacg
ctcgtcaagctgatgaccgacggaatcctgctggccgagactcaacacgatcctctgctg
ctccgttacgacacgctgatcattgacgaagcccacgagcgcagcctgaacatcgatttc
ttgcttggctacctcaaacggttgctgcctaagcgtcctgatctgaaagtcatcatcacc
tcggccacaatcgatgtggagcgttttgcggcgcatttcggcacgcctgaaacgccagcg
ccggtggtcgaggtgtcgggccgaacgttcccggtagacgtgcattaccgtccgttggcg
cgcagcgatgaggatgaagaggaccgcacactgcaagaaggcatcgttcacgccgtgcga
gaaatcgaaacgatcgaacgagaaaaaggctggctgcatggcccccgggacgtactggtg
tttttacccggcgagcgggagatccgtgaaactgccgatacgttgcgccgtgctgacttg
aaaggcaccgagattttgccgctgtacgcgcgcctctccaacgaagagcagaatcgggtg
tttgctcctcaccggggacggcggatcgtactggcgacgaacgtggccgaaacctcactc
accgtgccggggatacgctacgtcattgacccgggccttgtgcgcatcagccgttacagc
taccgggcaaaaattcagcgactgcccatcgagccagtcagccaggccagcgccaatcag
cgcaagggccgctgcggccggatcgccgaaggcgtctgtattcgtctttacgacgaagag
gattttctgtctcggcccgcgttcaccgacccggagatccagcgtaccaacctggcgtcg
gtcattttgtcgatgctggcactcaagctaggcagtatcgaagacttccccttcgtcgac
ccgcccgatagtcgcttcgtcaaagatggctttaggctgcttttcgagctcggtgccgtc
aacgagaagcagcaactgagcacactgggccgtaagctggcgaagctgcccatcgaccct
cgcttggcccgtatggtgttggctggtgcagagcggggctgcctgcgtgacgtactgatt
gtcgtatcggcgctggcgattcaagacccccgcgatcggcccgccgacaagcgccaagcc
gccgaccaggcgcatcagcgctggcacgatccggattccgacttcgtggcgttgttgaac
ttgtggcatggcattgataacgcccgcgatgcgctatccggcaaccagctgcgccgctgg
tgtcgcgagcactacatcaactacctgcgcatgcgcgagtggcacgatacgtttcgccag
ctacgccagctgttgcgggatatggatatcgaggtgcccgcaccgctaccccgtgatgag
aacgaaagcgaagagcaggccaagcaagccagacggaaaacgtccggtaagctgcatcag
gcgttactatcgggtctgctctcccatttgggcacgttacttgaaaaccgcgagtacctc
ggcgcgcgaaaccgcaagttcatgattcatccaggctcagggctggccaagaaaaccccc
aaatgggtcatggccttcgagttgatcgaaaccaccaagctgtttgcccgcaccgtcgcc
aaaatcgacccccaatggatcgaaccgcaggcggaacacttggtgaaacgcagctacagt
gagcctcactgggagatgaagcgtgcccaggtggtcgccttcgagcaggtcactctgttt
ggcctacctatcgtagcgcgccgtcgtgttcattatgggcccattgcgccacaggagtcg
cgggagctgttcatccgccgggcgctagtggaaggcgagtttcaaaccaaaggggcgttc
ttcgcccataatcgtgcgctaatcgatgaagtcgaagcgctagaagatcgcgcccgtcgg
cgggatattctcgttgacgaagagacgctctttgccttctacgacgagcgcatacccgca
gatgtcgtcaatggcaagggcttcgagcactggcgtaagcaggccgagcgtcaggaccct
gagctgctcaagttcgatatcgatgctctcaaggcccgggatgcccatgacgtcactctg
gcgcagtatccagatcatttaacgctgtctggcgtcgcgtacccggtcagttaccacttc
gacccggatgccgccgacgatggcgtgaccctaaccgtgcctgcggccatgctaccgcag
ttgcccgttcatgcccttgagtggttggtgccggggcttctacgcgagaagtgtattgcg
cttttgaaatcgctgccgaaaagcattcgtcgtcaggtagtgcccattcctgactgggtc
gatgctgcattggagacgctagcgcccgatgagcggccgcttaccgaagcgttgggtgag
ttcattcgccgacgtaccggcacccgtgttcatccagacgattggcgtctcgatttgcta
cccccgcacctgatcatgaacgtgcgagtggtcgatcatgcgggtgacatgcttggccag
gggcgcgacgtgagggcactagagaagcgtttcgaagaggcggctagtgcaggggcccag
gcgttggccgatcaggcaagccaagcgccttcgatggacgaactacctcagacaccgctg
cccgagtcgcgtgtgaccacgcaagcgggcattcgtgtagaagcctatccagcgctggtc
gccaatgggcatcatttcaacgtcagcctgttcgatcaccctgcgaaagccactgcggcc
caccaagagggcgttgcccggttagccatcgcaaagcagcccgagcaagtgaaagcgatc
aaacgcttgcctggggtggaaaagtgcgcgctgctatttgctaaagtaggcactaagcag
gtgctcgtggacgacttgctgctagcagtgtttacccaggtggtggcgacacatccgctg
ccgcgctctgcccctgagctcgccgagcgtctcgataggaccggcgactcgctgattccc
tatgcggtaacgcttttggagcgggttgaaaacgccttgaaagggcatttagccgtcacc
aaggtgcttaaagggaagctcaattttgcgttagcgctcgtttacagtgatgtgagcgca
cagatgcagcggttggtctatcctggcttcattcgcgatgctggggagtggcttgatgag
tatccacgctataccgaagccgcgttgattcgccttgaaaaggcggcccgcgaacgaggt
cgtgatcaaatgatgatgcaggatgtccaggcgctcgaagaacgcttcgacgcgcgacgc
aaaagcgagcgacgcggtaacgctgaagacccggcactcgtggtattcggctggtggctc
caggagctgcgtgtttctctgtttgcgcagcagctcggaacaaaaatgccggtgtcagta
aagcgcctggaaaaacgctgggaagagatcacgcatccctaa
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