Vreelandella piezotolerans: GYM47_07955
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Entry
GYM47_07955 CDS
T07036
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM47_07955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpiz03019
]
GYM47_07955
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM47_07955
Messenger RNA biogenesis [BR:
hpiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM47_07955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
Gag_p24
Sacchrp_dh_NADP
FANCF
Motif
Other DBs
NCBI-ProteinID:
QJA24046
UniProt:
A0A6H1Y6Z1
LinkDB
All DBs
Position
complement(1738671..1739924)
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AA seq
417 aa
AA seq
DB search
MSFSDLGLHDDLLRAVNAQGYTQPTPIQQKAIPVVLEGRDLLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVAAYGQHLSLRSHIIFGGVGQQPQVDAL
RHGLDVLVATPGRLLDLHQQGHVDLSAIEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNEIQTLAQQLLDNPALIEVAPRNTTAEKVEQAIYRVDRDKKRDLLAHLIQR
HNWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCIDEHGLLKNIER
LINQTLPKHIEPGFEPDPNAKPEPIENGRRSQRPPRRRKQDGPSTNTGGERRRRSRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgatcttggtctgcacgacgatttattacgcgcggtgaacgcgcagggc
tatacacagccgacgccgattcaacaaaaggccattcccgtcgttctcgaaggacgcgat
ctccttgccagcgcacaaaccggcacgggtaaaacggcaggcttcacactgccgatgcta
cagcgcttggcaaacggcaagcgtcccgggaagcgccaagtgcgcgcgctcgtcctcacg
ccgacccgcgagctggcggcacaggtgggcgaaagcgtagcggcctatggacaacacctt
tcgctgcgctcccacatcatttttggcggcgtcggtcaacagccccaagtcgatgcttta
aggcatggtctcgacgtgctggtcgctacccctggccgcctgctcgacctgcaccagcaa
gggcacgtcgacctgtccgccattgaaatcctggtactggatgaggcggaccgcatgctg
gacatgggcttcattcacgatatcaagcgcctactgcgcctggtccccaagcaacgccaa
aacctcctgttttctgccacattctccaacgagatccaaacgttggcgcagcagctactc
gataatcccgctctcatcgaggtggcgccacgcaacaccacggcagaaaaagtcgagcaa
gcgatctaccgagtggatcgcgataaaaagcgcgacttgttggcgcacttgatccagcgt
cacaactggtttcaggtactagtattcactcgcaccaagcacggcgctaaccggctagcc
gagcaactctccaagcaggatatccctgccatggcgatccacggcaacaaaagtcagggt
gcacgcacgcgtgcgctcggtgcgttcaagagcggcgatttacaggtgctcgtcgccact
gatattgccgcgcgcggcctagacatcaatgaacttccccatgtggtgaacttcgatctg
cccaatgtcgctgaagattacgttcaccgcatcggtcgcacagggcgtgcgggcagcaat
ggtgaagctgtctcgttggtgtgcatcgacgagcatggtctgctcaaaaacatcgagcga
ctgatcaatcaaacgttgccgaaacacatcgaaccgggcttcgagcccgaccccaatgcc
aagccagaacccatcgaaaatggtcgccggagtcagcgtccacctcgtcggcgcaagcaa
gatgggccatctaccaatacgggtggagagcgacgtcgccgtagccgccgctag
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