Vreelandella piezotolerans: GYM47_10225
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Entry
GYM47_10225 CDS
T07036
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM47_10225 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpiz03019
]
GYM47_10225 (rhlB)
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM47_10225 (rhlB)
Messenger RNA biogenesis [BR:
hpiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM47_10225 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJA24447
LinkDB
All DBs
Position
complement(2234815..2236089)
Genome browser
AA seq
424 aa
AA seq
DB search
MSESEQTTASAQNRKPKRRRRKPRRRQSNWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
AQGFEYCTPIQAEALRHTLLGGDIVGKAQTGTGKTAAFLISVLAYFLEEPTPEGQKPGAP
RALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRDSLSKKIDILVATPGRL
LDFHQKRDIDLSETEVLVLDEADRMLSMGFIPDVKRIIRYTPKKEERQTFLFSATFTDDI
LNLASQWTLDPAHVEIEVTVENQADIDQRVYLVSDDDKQRLLVKLLEQESFERVMVFGNR
RDLVRKLDDLLKKAGVSAAMLSGDVPQNQRIKTLESFREGGVQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERYINGKLPCEHPP
EGML
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaacagaccacagcatcggcccagaaccgcaagccaaaacgtcgtcgt
cgtaaaccgcgtcgtcgtcagtctaactgggatcttcgtcagtttcaggtgcccgccgtt
gccggcaagtggcgcttccatgactttgatctgccgctgcctttgatgcgtgcgattcac
gcccaagggttcgagtactgcacgcctatccaagcggaagcactgcgccatacgctgttg
ggaggcgacatcgtcggtaaagcgcagacgggaaccggtaaaaccgccgcctttttgatc
tccgtgttggcctattttctcgaagagcccacaccggagggccaaaagccgggggctccc
cgcgcgctgatcatcgcgccgacccgtgagctggcgctgcaaatcgagaaagacgccaag
gcgcttgcgcgctttactcagcttaatgtcgccagtgtcgtcggcggcatggattatcaa
aaacagcgcgatagcctgagcaagaagatcgatatcctggtcgccacgcctgggcgcctg
cttgattttcatcagaagcgtgatatcgacctctctgaaaccgaagtgctggtgctcgac
gaagcagatcgtatgctctccatggggttcatccccgacgtgaagcggatcattcgctac
acgccaaaaaaagaggagcgccagacgttcctgttctcggccaccttcaccgacgatatt
ctcaatctggcgagtcagtggacgctcgatccggcgcatgtcgaaatcgaagtgaccgtt
gaaaatcaggcggatatcgatcagcgggtctatctcgtctccgatgacgacaagcaacgc
ctgctggtcaagctactggagcaggagagcttcgagcgcgttatggtgttcggaaatcgc
cgcgatctcgtgcgtaagttggatgacctgctgaaaaaagccggtgtcagtgcggccatg
ctatcgggtgatgtgccgcagaatcagcgcatcaagacgctggaaagcttccgcgaaggg
ggcgtgcaggtgctggtggccaccgacgtggccggccgcggaattcatatcgaagacgtg
agccacgtgatcaactataccttgccagaagacccggaagattacgttcatcgtatcgga
cgtaccggccgtgccggggcgaaaggggtgtcgatcagcttcgtcggcgaagaggacgct
ttctcgttgcctgaaatcgagcgctatatcaacggtaagttgccctgcgaacacccgccg
gaaggcatgctgtaa
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