Vreelandella piezotolerans: GYM47_12290
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Entry
GYM47_12290 CDS
T07036
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GYM47_12290 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpiz03400
]
GYM47_12290 (recD)
Enzymes [BR:
hpiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GYM47_12290 (recD)
DNA repair and recombination proteins [BR:
hpiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GYM47_12290 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
AAA_22
NAT10_TcmA_helicase
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_28
NTPase_1
AAA_16
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QJA24818
LinkDB
All DBs
Position
2690439..2692772
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AA seq
777 aa
AA seq
DB search
MSRQHDTHTFDMFGDAASAHPALGSTPELLALCERWVARGWLRDLDRALVRFLASEAPDA
PTLLLLAAALASHQLGRGHVCLDINATLNAPDFALSLPPEGDDLTDPPPLPSDVLATLTL
SEWQAALHHPLLTSEGPGNTPLVVVTTHSVSGTPSTRLYLRRYWQYEQSLHQHIAARLEA
TSTGSESTGTEGQSGRPNHLTTEPTTSHTASTGSESKGGRPIHWATGDASHPGLLPQALN
ILFKQSNGLDWQKTACALAARSRFGIITGGPGTGKTTTVVRLLALLQTLQLAQHPSQPLR
IRLAAPTGKAAARLNESIAGQVNALPLAELATLLSEHSPAATASEIAIPTEVTTLHRLLG
ARPDTRHFRHSAANPLALDVLVIDEASMVDIEMMAATLSALPAHAQCILLGDKDQLASVE
AGSVLGDLCRRAEASHYTPATADWLAQATGQPLPAEFIDPAGQPLDQAITMLRVSHRFNE
HSGIGQLAKAINQPGHAQSDREKQQAVTAVLRHGYPDIHHLVMSDDAALDKLVIHGSPSG
FAGNGDGRTDHEGQPIAPPTGYCHYLNVLQAQRPRGESFEENQAAYNTWASEVLSAYSHF
QLLCALRKGPWGVEGLNQRIASTLRREKLLFGSDYTLEKGWYEGRPVLVTQNDYGLKLMN
GDIGITLAVPDPRHPQQTLLRVAFPTSDTDKPIRWVLPSRLHAVETVFAMTVHKSQGSEF
LHTALLLSPTLNPILTRELVYTGITRAREWLTVVEAKRGVLNEAVTREVMRVSGVKR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccagcacgatactcacaccttcgatatgttcggcgatgccgccagcgcccac
ccggcactcggcagcaccccggaactgctggccctgtgcgaacgctgggtagcgcgaggc
tggctgcgggatttagaccgcgccctggtgcgctttttagccagtgaagccccggacgcc
cccacgctgctgctactggcggcagcgctggccagccaccagctaggccgcggccatgta
tgcctggatattaacgccacgctcaacgcgccggatttcgccctttcgctaccgcccgaa
ggggacgacctcaccgacccgccgccgctgcccagcgacgtgctggccacgctcacgctc
agcgaatggcaagccgccctgcaccacccgctgctcaccagcgaaggccccggcaacaca
ccgctggttgtagtgaccactcactcagtcagcggcacccccagcacgcggctctacctg
cgccgctactggcagtacgaacaaagcctgcaccaacacatcgccgcacgcctggaagcc
accagcaccggctcagaaagcacgggcacagaaggccaaagtgggaggccaaatcatctg
acaaccgagccaaccactagccacacagcaagcacaggctcagaaagcaaaggtgggagg
ccaattcattgggcgacgggtgacgccagtcaccctgggttactcccccaagccctgaac
atactgttcaaacaaagcaacggcctagactggcaaaaaaccgcctgcgccctggctgcc
cgcagccgcttcggcatcattaccggcggccccggcaccggcaaaaccaccaccgtggta
cgcctgctcgccctgctgcaaaccctgcaactggcccagcaccccagccagccgttgcgc
attcgcctagccgcccccaccggcaaagccgccgcccgcttgaacgaatctattgctggg
caggtgaatgcgttaccgctcgctgaattggcaacgctactcagtgaacactcacctgcg
gcaacagccagcgagatcgcgattcccacggaagttaccaccctccaccgcctgctcggc
gcacgccccgatacccgccacttccgccacagcgccgccaacccgctggcgctggatgtg
ctggtgatcgacgaagcctcgatggtggatatcgaaatgatggccgcgaccctcagcgcc
ctgcccgcccacgcccagtgcattctgctgggggataaagaccagctcgcctcggtagag
gcaggctcggtactcggcgacctatgccgccgcgcggaagcctcacactacacccccgcc
accgccgactggctggcccaagccaccggccagccgctgccagccgagttcatcgaccct
gcaggccaaccgctcgaccaagccattaccatgctgcgggttagccaccgcttcaatgaa
cacagcggcatcggccagttagcgaaagccattaaccagcctggccatgcgcaaagtgat
cgggaaaaacagcaggcggtaacggccgtgctgcgccacggctacccagatattcaccat
ttggtgatgagtgacgacgccgcgctggataagctggtaattcacggtagccccagcggc
tttgcgggcaacggtgacggccgcaccgaccacgaaggccagcctatcgccccgcccacc
ggctactgccactacctcaacgtgctgcaagcccagcgcccacggggggagtcgttcgag
gagaaccaagccgcctataacacctgggccagcgaggtgctcagcgcctatagccacttc
caactgctgtgcgcgctgcgcaaaggcccctggggggttgaagggttaaaccaacgcatc
gccagcacattgcgccgcgaaaagctgctgttcggcagtgactacacgctagagaaaggc
tggtatgaaggccgccccgtgctggtgacccaaaacgactacggcctgaaactgatgaac
ggcgatatcggcatcaccctggccgtgcccgacccgcgccatccgcagcaaacgctattg
agagtggcctttcccactagcgacaccgacaaacccatccgctgggtgctgccttcacgc
ctgcacgcggtagaaaccgtgtttgcgatgacggtgcacaaatcccaaggctcggagttc
ttgcacaccgcgctactgctgtcccccacgctcaaccccattctgacccgcgagctggtc
tacaccggcatcacccgcgcccgcgaatggctcacggtggtggaagccaaacgcggggtg
ttgaatgaggcggtgactcgagaggttatgagagttagtggagtgaagaggtaa
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