Vreelandella piezotolerans: GYM47_17350
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Entry
GYM47_17350 CDS
T07036
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpiz
Vreelandella piezotolerans
Pathway
hpiz03420
Nucleotide excision repair
hpiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYM47_17350 (uvrD)
03430 Mismatch repair
GYM47_17350 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpiz03400
]
GYM47_17350 (uvrD)
Enzymes [BR:
hpiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM47_17350 (uvrD)
DNA repair and recombination proteins [BR:
hpiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYM47_17350 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
GYM47_17350 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QJA25723
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All DBs
Position
3782816..3785014
Genome browser
AA seq
732 aa
AA seq
DB search
MDDVTAILDQLNPAQREAVSAPQGNLLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYALLA
VTFTNKAAREMRTRLEALLGISMRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLIKRLLKDYSIDDERFPPRQVQGFIAGCKEEGLRPHQVNVNGDGYLAQMVELYERYQF
TCERGGLVDFGELLLRSLELLRDNPLLLNHYRERFGHVLVDEFQDTNTLQYAWLKLLTGQ
QTPMTAVGDDDQSIYGWRGAKVENIRRFEEEFPDTHTVRLEQNYRSTSAILDAANALISH
NSERLGKNLWTDGIEGEPISVYAGFNDLEEARYIVDTIKEKTEEGFNRRDVAILYRSNAQ
SRLLEETLIRQGMPYRIYGGHRFYERLEIKNALAYLRLLLNRDDDASLERVINVPTRGIG
TRTVEIVRHRAREQSVSLWQALHDAIQDGTLKGRAGNAVQAFANLIEQLDNDAAGLPLHE
IIDHVTAHTGLIEHHQSERGEKGQARVENLEELVTAARAFTHGDAFETPEAGEGMAALEA
FLSEAALNAGDHEAEEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSVEEPGRLE
EERRLCYVGVTRAMQKLYLTHAETRRLHGKEVFPRPSRFLRELPPHLLEEVRLRGHVSRP
VTASRQSFAQTNIESDGELPALHVGQRVEHPVFGEGIILNAEGEGARARVQVSFDGEGVK
WLVLGFAKLTPL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgatactcgatcagctcaaccccgcccagcgagaggccgtcagt
gccccccagggcaacctactggtactggcgggcgcgggctccggtaaaacccgcgtgctg
gttcaccgcattgcctggctgatgcaggccgaggggctgtcgccttacgcgctgctggcg
gtcacgtttaccaataaagcggcgcgcgaaatgcgcacgcgcctggaagcgctgctgggc
atctccatgcgccacgtgtgggtcggcaccttccactccattgcccaccggctgctgcgt
acccactggcaagatgcccgcctgccgcaacacttccaaatcatcgattccgatgatcag
ctccggctgatcaaacgactgctcaaagattactcgatcgacgacgagcgcttcccgccc
cgccaggtgcaggggttcattgcgggctgcaaagaggaagggctgcggccacaccaagtc
aacgtcaacggtgatggctatttggcacagatggtcgagctctacgagcgctatcagttc
acctgcgaacgcggggggctggtggatttcggcgagctgctgctgcgcagcctggagctt
ttgcgcgacaacccgctgctgctgaaccactatcgcgagcgtttcggccatgtgctggtg
gacgagttccaagacaccaacaccctacagtacgcgtggctgaaactgctgaccggccag
caaacgccgatgacggcggtgggcgatgatgaccagtcgatttacggctggcggggcgcc
aaagtggaaaacattcgccgcttcgaagaggagtttcccgatacccacacggtgcgtctg
gagcagaactatcgttcgaccagcgcgattttggacgctgccaacgcgctgatcagccat
aacagcgagcggttgggcaaaaacctctggaccgatggtatcgagggcgaaccgatctcg
gtgtatgccgggttcaacgacctggaagaagcccgctacatcgtcgacaccatcaaagag
aaaaccgaggagggcttcaaccgtcgtgatgtggccattctataccgctccaacgcccag
tcacggctgctggaagagacgctgattcgccaagggatgccctaccgcatctacggcggc
caccgcttttacgagcggctggagatcaagaacgccctggcctacctgcgcctgctgctc
aatcgtgacgacgatgcctccctcgaacgcgtcatcaacgtccccacccgaggcatcggc
actcgcacggtggaaatcgttcgccaccgcgcccgcgagcagagtgtctcgctctggcag
gcgctccacgacgcgattcaggatggcaccttgaaaggccgcgcgggcaacgccgttcaa
gccttcgccaacctgatcgagcagctcgataacgacgccgccgggctaccgctacatgaa
atcatcgatcatgtcactgcccataccgggttgatcgaacaccatcaaagtgagcgtggt
gaaaagggccaggcccgtgtcgaaaacttggaagagctggtcaccgccgcccgcgccttc
acccatggcgacgccttcgaaaccccggaagcgggcgaaggcatggcagcactggaagcc
ttcttatcagaagccgccctcaacgcgggcgaccacgaagccgaagagttcgaggacagc
gtgcaactgatgacgctgcattcggccaagggcctggagtttcccgtggtgttcatcgcg
ggcgtggaagaggggctgtttccccacaagatgtccgtggaagagcctgggcggctcgaa
gaggagcgtaggctttgctacgtgggcgtcacacgcgccatgcagaagctctacctcacc
cacgcggaaacccgccgactgcacggtaaagaagtgtttccacgcccatcgcgcttcttg
cgtgagctgccgcctcatctgctggaggaggtccgcctgcgaggccatgtatctcgcccg
gtgaccgcctcgcggcaaagttttgcccaaaccaatatcgagagcgacggcgagctccct
gcgctgcacgtcggccagcgagtcgagcacccggtcttcggcgagggcatcattctcaac
gccgagggagaaggcgcccgtgcgcgggtgcaggtgagcttcgatggcgaaggcgtgaag
tggctcgtgctcggttttgccaaactgacaccgctttga
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