Helicobacter pylori J99: jhp_0232
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Entry
jhp_0232 CDS
T00020
Symbol
deaD
Name
(GenBank) ATP-DEPENDENT RNA HELICASE DEAD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
jhp_0232 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpj03019
]
jhp_0232 (deaD)
03009 Ribosome biogenesis [BR:
hpj03009
]
jhp_0232 (deaD)
Enzymes [BR:
hpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
jhp_0232 (deaD)
Messenger RNA biogenesis [BR:
hpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
jhp_0232 (deaD)
Ribosome biogenesis [BR:
hpj03009
]
Prokaryotic type
rRNA helicases
jhp_0232 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
P-loop_SecA
AAA_22
UvrD-helicase
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AAD05818
UniProt:
Q9ZMI8
LinkDB
All DBs
Position
252488..253963
Genome browser
AA seq
491 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIKALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFKKSHHRDRHPK
TNRYSKKHKRR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgatgatgacgcttatcataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtctatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggtcgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaat
aaccttaaaaacaaccacaccataaaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtg
atgatcgccacgccaggaaggctgttggatcatttaaagaacgagcgcatccataaattt
gtgcctaaagtggtcgtgttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagattagcggataagattttagaaaaccctattaaaatc
catatcgccccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcctgaaaagagc
attgttttcacgcgcaccaaaaaagaggccgatgaattgcaccaattccttgcttctaaa
aattacaaaagtaccgccttgcatggggatatggatcaaagggatcgccgctcttctatc
atggcgtttaaaaaaaatgacgctgacgtgttggtggctacagatgtggcgagccgaggg
cttgatattagcggtgtaagccatgtgtttagttaccacttgcccctaaacactgagagc
tatatccatcgcattgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccctttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gagctttttgaaatccccaccattaatgaaaatcagatcatcaaaaccctacatgacgct
aaagtgtctgaagggatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagtaaaattggcttgaatcag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaacccccaaacaaaaaa
acgcagcacgagccagcgcactcttttaaaaagagccaccacagagacagacaccctaaa
acgaatcgttattctaaaaaacacaaacgccgttaa
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