Helicobacter pylori J99: jhp_0819
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Entry
jhp_0819 CDS
T00020
Symbol
vacA
Name
(GenBank) vacuolating cytotoxin
KO
K11028
vacuolating cytotoxin
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03070
Bacterial secretion system
hpj05120
Epithelial cell signaling in Helicobacter pylori infection
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
jhp_0819 (vacA)
09160 Human Diseases
09171 Infectious disease: bacterial
05120 Epithelial cell signaling in Helicobacter pylori infection
jhp_0819 (vacA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hpj02000
]
jhp_0819 (vacA)
02044 Secretion system [BR:
hpj02044
]
jhp_0819 (vacA)
02042 Bacterial toxins [BR:
hpj02042
]
jhp_0819 (vacA)
Transporters [BR:
hpj02000
]
Other transporters
Pores ion channels [TC:
1
]
jhp_0819 (vacA)
Secretion system [BR:
hpj02044
]
Type V secretion system
Autotransporter-1 (AT-1) family
jhp_0819 (vacA)
Bacterial toxins [BR:
hpj02042
]
Type III toxins: Intracellular toxins
Others
Vacuolating cytotoxin
jhp_0819 (vacA)
Type II toxins: Membrane damaging toxins
Pore-forming toxins, Other
jhp_0819 (vacA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VacA
Motif
Other DBs
NCBI-ProteinID:
AAD06400
UniProt:
Q9ZKW5
LinkDB
All DBs
Position
900011..903877
Genome browser
AA seq
1288 aa
AA seq
DB search
MEIQQTHRKINRPLVSLVLAGALISAIPQESHAAFFTTVIIPAIVGGIATGTAVGTVSGL
LSWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR
HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKD
SADRTTRVNFNAKNISIDNFVEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD
GATLNLASNSVKLNGNVWMGRLQYVGAYLAPSYSTINTSKVQGEVDFNHLTVGDQNAAQA
GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNSTTSQSGTKNDKKEISQNNNSNTE
VINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIFHLNTKADGTIKVGGFKASLTTNAAHL
NIGKGGVNLSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGVDTK
NGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTDKVNINKLITASTN
VAVKNFNINELIVKTNGISVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKSGEK
LVINDFYYSPWNYFDARNVKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVMDYSQF
SNLTIQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQD
LIKNTEHVLLKAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDI
KACGMAIGNQSMVNNPDNYKYLIGKAWRNIGISKTANGSKISVYYLGNSTPTENGGNTTN
LPTNTTNNAHSANYALVKNAPFAHSATPNLVAINQHDFGTIESVFELANRSKDIDTLYTH
SGAQGRDLLQTLLIDSHDAGYARQMIDNTSTGEITKQLNAATDALNNVASLEHKQSGLQT
LSLSNAMILNSRLVNLSRKHTNHINSFAQRLQALKGQEFASLESAAEVLYQFAPKYEKPT
NVWANAIGGASLNSGSNASLYGTSAGVDAFLNGNVEAIVGGFGSYGYSSFSNQANSLNSG
ANNANFGVYSRFFANQHEFDFEAQGALGSDQSSLNFKSTLLQDLNQSYNYLAYSATARAS
YGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSQSQVALKNGASSQHLFNANANVEARY
YYGDTSYFYLHAGVLQEFAHFGSNDVASLNTFKINAARSPLSTYARAMMGGELQLAKEVF
LNLGVVYLHNLISNASHFASNLGMRYSF
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggaaatacaacaaacacaccgcaaaatcaatcgccctttagtttctctcgttttagca
ggagcgttgattagcgccataccgcaagagagtcatgccgcctttttcacgaccgtgatc
attccagccattgttgggggtatcgccacaggcactgctgtaggaacggtctcagggctt
cttagttggggactcaaacaagccgaagaagcgaataaaaccccagataaacccgataaa
gtttggcgcattcaagcaggaaaaggctttaatgaatttcctaacaaggaatacgactta
tacaaatcccttttatccagtaagattgatggaggttgggactgggggaacgccgctagg
cattattgggtcaaaggcgggcaatggaacaagcttgaagtggatatgaaagacgctgta
gggacttataaactatcagggcttagaaactttactggtggggatttagacgtgaatatg
caaaaagccactttgcgtttgggccaattcaatggcaattctttcacaagctataaggat
agcgctgatcgcaccacgagagtgaatttcaacgctaaaaatatttcaattgataatttt
gtagaaatcaataatcgtgtgggttctggagccgggagaaaagccagctctacggttttg
actttgcaagcttcagaagggatcactagcagtaaaaatgcggaaatttctctttatgat
ggcgccacgctcaatttggcttcaaacagcgttaaattaaatggtaatgtgtggatgggc
cgtttgcaatacgtgggagcgtatttagccccttcatacagcacgatcaacacttcaaaa
gttcaaggggaagtggattttaaccatctcactgtgggggatcaaaacgccgctcaagcg
ggcattatcgctagcaataagactcatattggcacactggatttgtggcaaagcgccggg
ttaaatatcattgcccctccagaaggtggctacaaggataaacctaatagtaccacttct
caaagtggcactaaaaacgacaagaaagagatcagtcaaaataacaatagcaacacagag
gtcattaacccacccaataacacgcaaaaaacagaaactgaacccacgcaagtcattgat
gggccttttgctggcggcaaagacacggttgtcaatattttccacttaaacactaaagcc
gatggcacgattaaagtgggagggtttaaagcttctcttaccacgaatgcggctcatttg
aatatcggcaaaggcggtgtcaatctgtccaatcaagcgagcgggcgcacccttttagtg
gaaaatctaaccgggaatatcaccgttgatgggcctttaagagtgaataatcaagtgggt
ggctatgctttggcaggatcaagcgcgaattttgagtttaaggctggtgtggatactaaa
aacggcacagccactttcaataacgatattagtttgggaagatttgtgaatttaaaggtg
gatgctcatacagctaattttaaaggtattgatacgggtaatggtggtttcaacacctta
gattttagtggtgttacagacaaagtcaatatcaacaagctcatcacagcttccactaat
gtggccgttaaaaacttcaacattaatgaattgattgttaaaaccaatgggataagtgtg
ggggaatacactcattttagcgaagatataggcagtcaatcgcgtatcaataccgtgcgt
ttggaaactggcactaggtcaatcttttctgggggtgtcaaatttaaaagcggtgaaaaa
ctagttatcaatgatttttactatagcccttggaattattttgacgctaggaatgttaaa
aatgttgaaatcaccagaaaattcgcttcttcaaccccagaaaacccttggggcacatca
aagctcatgtttaataatctaaccttgggtcaaaatgcggtcatggactatagtcaattt
tcaaatttaaccattcagggggattttatcaacaatcaaggcactatcaactatctggtc
cgaggcgggaaagtggcaaccttaaatgtaggcaatgcagcagctatgatgtttaataat
gatatagacagcgcgaccggattttacaaaccgctcatcaagattaacagcgctcaagat
ctcattaaaaatacagagcatgttttattgaaagcgaaaatcattggttatggtaatgtt
tctacaggtaccaatggcattagtaatgttaatctagaagagcaattcaaagagcgccta
gccctttataacaataataaccgcatggatacttgtgtggtgcgaaatactgatgacatt
aaagcatgcggtatggctatcggcaatcaaagcatggtgaacaaccctgacaattacaag
tatcttatcggtaaggcatggagaaatataggcatcagtaaaacggctaacggctctaaa
atttcggtgtattatttaggcaattctacgcctactgagaatggtggcaataccaccaac
ttacccacaaacaccactaataatgcgcattctgctaactacgctctcgtgaagaacgct
cctttcgctcacagcgccactcctaatttagtcgctatcaatcagcatgattttggcact
attgagagcgtgtttgaattggctaaccgctctaaagatattgacacgctctatactcat
tcaggcgcgcaaggcagggatctcttgcaaactttattgattgatagccatgatgcgggt
tatgccagacaaatgattgataacacaagcaccggtgaaatcaccaagcaattgaatgcg
gccactgacgctttaaacaacgtagccagtttagagcataaacaaagcggcttacaaacc
ttgagcttgagtaatgcgatgattttaaattctcgtttagtcaatctctctaggaagcac
accaaccatattaactcgttcgctcaacgcttacaagctttaaaaggccaagaattcgct
tctttagagagcgcggcagaagtgttgtatcaatttgcccctaaatatgaaaaacctacc
aatgtttgggctaacgctattgggggagcgagcttgaatagcggctctaacgcttcattg
tatggcacaagcgccggcgtagacgctttccttaacgggaatgtggaagccattgtgggc
ggttttggaagctatggttatagctcctttagcaatcaagcgaactctcttaactctggg
gccaataacgctaattttggcgtgtatagccgtttttttgccaaccagcatgaatttgac
tttgaagctcaaggggcgctagggagcgatcaatcaagcttgaatttcaaaagcactcta
ttacaagatttgaatcaaagctataattacttagcctatagcgccacagcaagagcgagt
tatggttatgacttcgcgttttttaggaacgctttagtgttaaaaccaagcgtgggcgtg
agctataaccatttaggttcaaccaactttaaaagcaatagccaatcacaagtggcttta
aaaaatggcgcgagcagtcagcatttattcaacgctaacgctaacgtggaagcgcgttat
tattatggggacacttcatacttttatttgcatgcgggagttttacaagagttcgctcac
tttggatcgaatgatgtggcgtctttaaacacctttaaaatcaatgccgctcgcagtcct
ttaagcacctatgcaagagcgatgatgggtggggaattgcaattggctaaagaagtgttt
ttgaatttgggcgtggtttatttgcacaatttgatttccaacgcaagccatttcgcttcc
aatttaggaatgaggtatagtttctaa
DBGET
integrated database retrieval system
