Helicobacter pylori J99: jhp_1353
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Entry
jhp_1353 CDS
T00020
Symbol
dnaE
Name
(GenBank) DNA POLYMERASE III, ALPHA CHAIN
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03030
DNA replication
hpj03430
Mismatch repair
hpj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
jhp_1353 (dnaE)
03430 Mismatch repair
jhp_1353 (dnaE)
03440 Homologous recombination
jhp_1353 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpj03032
]
jhp_1353 (dnaE)
03400 DNA repair and recombination proteins [BR:
hpj03400
]
jhp_1353 (dnaE)
Enzymes [BR:
hpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
jhp_1353 (dnaE)
DNA replication proteins [BR:
hpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
jhp_1353 (dnaE)
DNA repair and recombination proteins [BR:
hpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
jhp_1353 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AAD06929
UniProt:
Q9ZJF9
LinkDB
All DBs
Position
complement(1480574..1484209)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLSFEDDASYFAHKAREGLRERLILVPEEKHEQYKERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEDVREIPPMEMLA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagccttcacgcatttgcacttacacacagaatattcgcttttagac
ggggcgaataagattaaaatcttagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaaccgaccatgggaacatgtttggagcgattgatttttacacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataacgatgacaacctctct
agcaaagaaaccaagcaacgcttccatttgtgcttgttcgctaaaaaccaagagggctat
gaaaatttgatgtttttaagctctatggcgtatttagaagggttttattatttcccgcgc
atcaataaaaagcttctaagggagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattatcatttgaatactaacaatgagagaaaccgcaagtatggggct
aaaggctatgatgaagctaaaagaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgtcatggcattttagatcagcgattcattgatgaacaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgctaaggctcaagaagtagcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccctgaagaa
atggcgaagctgtttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaatcccccaacccccccaagt
ttcaaattcactaaagcttacgctcaaaatgaggggctgagttttgaagatgacgcttct
tatttcgcccataaggctagagagggcttgagagaacgcttaatcttagtgccagaagaa
aagcatgaacaatacaaagagcggctagaaaaagaaattgaagtcattacgaacatgaaa
ttcccagggtatatgctgatcgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagtgcggccgggagtttggtggcttttgccttaaaaatc
accgatattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccctgaacga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaagaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggcacaagtcatcacctttaataagatg
ttggctaagggcgtgatcagagatgtcgcaagggttttggacatgccttataaggaggct
gatgattttgccaaactcatacctaatcgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattggtggag
agcaatgaagtagccaaacaagtgtgggaatattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagaattgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgatcaagtttgacttcttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcaacataacattgatgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagtggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattatcgccattatcgcgctaggcagaccaggacccatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcgttgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacctacggcacgatcgtctatcaagagcaggtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcaaatcatggcggacaataaggccaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatctgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcagccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatc
gaatccgtggcgcgctatattgatgaggttagggctttagaaattgaagtgatgcctccg
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgaa
ttagaaaagaaaatcgtgttcggtttgggagcggttaagggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattataagagtttggaagatttcatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggacaatttgggctacactagaaaaaccatgctcgctaacttggatttgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaattctctttttgga
gccatggaaggcggaattaaagagcaggttgttttggacatggttgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttaggaatccatgtttcaggcaac
cctttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagctagagattggctcgcaggcttatttgctcggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggatcgatac
ggcaagtttgaactcatgctttttgaaaagcaattaaacgctttagaagagttggatatt
aataagcccttagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatttagagagtgctagggaggttaaaatccctaaagcccgctat
aaagaccctgaaaagcaaaaagaagacgtgcgcgaaatcccccccatggaaatgctcgct
tctagctcttgctctttggcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctctaaaacaccagggtaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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integrated database retrieval system
