Helicobacter pylori J99: jhp_1458
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Entry
jhp_1458 CDS
T00020
Symbol
mfd
Name
(GenBank) TRANSCRIPTION-REPAIR COUPLING FACTOR
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
jhp_1458 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpj03400
]
jhp_1458 (mfd)
Enzymes [BR:
hpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
jhp_1458 (mfd)
DNA repair and recombination proteins [BR:
hpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
jhp_1458 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AAD07030
UniProt:
Q9ZJ57
LinkDB
All DBs
Position
1606102..1609107
Genome browser
AA seq
1001 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNIKAVLFPELRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYIPNSKAYRLSFFDAECESIKELDPATQMSL
KEDLLEIEIPPTLFSLDEPSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLGVYQ
SIISPRALEEIQELASLNELDDERFKFLKVLENAQGYEDLEIHVHALEGFIALHSNRKIT
LLAPNKTILDNSISVLDAGNMECVIAPFVLNFKTPDRIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVVQS
DSVPVKDRLGKGSFLKLKAKVRAKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSH
AGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAILGT
KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKT
PPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKI
AILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQ
LRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNL
LGQDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLR
LDLYRRLSLCENVDEVGQIHEEIEDRFGKMDDLSAQFLQIITLKILANQLGILKLSNFNQ
NITLTYSDEKKESLKAPSKDDNDILETLLKHLHAQISLKRR
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagaatccgagctcgctaaagaagtcataagctattttaagccaaat
attaaagccgttcttttcccggagcttagggctaaaaaaaacgatgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttgagggagttttatcaggccttagaaaac
aagcaagaaactatcatcattgcccctattagcgctttattacaccctttacccaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaagtataaccttaaggatttgaaa
gacaaactcttttattatggctatgaaattttagacttagtggaagtggagggtgaagcg
agctttaggggggatattgtggatatttatatacctaattctaaggcgtatcgcttgagt
ttttttgacgcagagtgtgagagcattaaggaattggatcccgccactcaaatgagtctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggacgaaccatct
tataaggatctaaaaacaaaagtggaacaaagccccttaaatagcttttctaaagattta
accagtttcggtttgtggtttttaggagaaaaagcaaacgatttgttgggcgtttatcaa
agcatcataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gatgatgagcgtttcaaatttttaaaggttttagaaaacgcgcaaggctatgaagattta
gaaatccatgtgcatgccctagaaggctttatcgctttgcattcaaatcgtaaaatcacg
ctcctagcccccaataaaacgattttagacaactcaataagcgtgcttgatgcaggcaac
atggaatgcgtcatcgccccctttgtgttaaattttaaaacccctgataggattttcatc
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaattg
atccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaacctgcatctcatcgctcgctatgtggtgcaaagc
gatagcgtgccggttaaagaccggctagggaaagggagctttctcaaattaaaagctaaa
gtcagggctaagcttttagaaattgcgggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttggcggagttggaaatctttaaatcgcat
gcgggttttgaatacaccagcgatcaagaaaaagccatcgctgaaatttcaagggattta
agctctcacagggtgatggacagattattgagtggggatgtgggttttgggaaaacggaa
gtggcgatgcatgcgattttttgcgcgtttttaaacggctttcaaagcgcgctagtcgtg
cctactactttattagcccaccagcattttgagactttaaaggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatattaaaaccagcgaaaaaagcaagctttta
aaggcggtggaattagggctagttgatgtgctaataggcacgcatgcgattttaggcacg
aaattcaaaaacttgggcttaatggtcgtagatgaagagcataaatttggcgtgaaacaa
aaagaagctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgccacgcct
atcccgcgcactctaaacatggcgctttctcaaattaaaggcattagctctttaaaaacc
ccacccacagacagaaagcccagccgcacttttttgaaagaaaaaaatgacgaactttta
aaagagattatttacagagaattgcgccgtaacgggcaaattttttacatccataaccac
atcgctagcatttcaaaagtcaaaaccaagctagaagatttaatccctaagcttaaaatc
gccattttgcattcccagattaacgctaacgagagtgaagaaatcatgctagagtttgct
aaggggaactatcaggttttattatgcacttctattgtggaatcgggcatccatttgcct
aacgctaacacgattattatagataatgcgcaaaatttcggcctggctgatttgcaccag
ttaagagggcgtgtggggagaggcaaaaaagaaggcttttgctatttcctcatagaagat
caaaaaagtttgaatgaacaggctttaaaacgcttgctcgctctagaaaaaaattcgtat
ttaggcagtggggagagtatcgcctatcatgatttagaaattagggggggcgggaatttg
ctcgggcaagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatg
cttgaagacgcgatttatgaattgagtggggggaagaaaaggcttgaaaaaagcgtagaa
atccaacttggcgtgagcgcttttttaaaccctgaactcatcgcaagcgatagtttgagg
ttggatctataccgccgtttgagtttgtgtgaaaatgtagatgaggtggggcaaatccat
gaagaaatagaagacaggtttggtaaaatggacgatttgagcgctcaatttttgcaaatc
attacgcttaaaatcttagccaaccagcttggcatccttaaactttctaatttcaatcaa
aacatcacccttacttatagcgatgaaaaaaaagaaagcctgaaagccccaagcaaagac
gataacgatattttagaaacccttttgaaacatttgcacgctcaaatttctttaaaacgg
cgttaa
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integrated database retrieval system
