Helicobacter pylori B8: HPB8_1316
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Entry
HPB8_1316 CDS
T01262
Symbol
deaD
Name
(GenBank) putative helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpl
Helicobacter pylori B8
Pathway
hpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB8_1316 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpl03019
]
HPB8_1316 (deaD)
03009 Ribosome biogenesis [BR:
hpl03009
]
HPB8_1316 (deaD)
Enzymes [BR:
hpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPB8_1316 (deaD)
Messenger RNA biogenesis [BR:
hpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPB8_1316 (deaD)
Ribosome biogenesis [BR:
hpl03009
]
Prokaryotic type
rRNA helicases
HPB8_1316 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
UvrD-helicase
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CBI66873
UniProt:
D7FFB6
LinkDB
All DBs
Position
complement(1291147..1292625)
Genome browser
AA seq
492 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSHKKTPQHERARSFKKGQHRDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgatgatgacgcttatcataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagagttagcc
atgcaaattagcgatgagattttcaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaattcattaagaaaaacccccaagtg
atgatcgccacaccaggaaggctattggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgtgttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
atcgttttcacgcgcactaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgtgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacggatgtggcgagccgaggg
ctagacattagcggtgtaagccatgtgtttaattaccacttgcccctaaacaccgagagc
tatatccatcgcattggcagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacaccaaaaccctctcacaaaaaa
acgccccagcatgagcgagcgcgttctttcaaaaagggtcagcacagagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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