Helicobacter pylori B8: HPB8_1477
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Entry
HPB8_1477 CDS
T01262
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hpl
Helicobacter pylori B8
Pathway
hpl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPB8_1477 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpl03021
]
HPB8_1477 (rpoD)
Transcription machinery [BR:
hpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPB8_1477 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
MCR_beta_N
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
CBI67034
UniProt:
D7FFS7
LinkDB
All DBs
Position
1448357..1450396
Genome browser
AA seq
679 aa
AA seq
DB search
MKKKANEEKAQKRAKQEAKAEATQENKQENKAKESNKAKEGKIKENKTKESKVKETAKEL
VPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSS
EYAKKLNAIDKIKKTEEKQKVLNEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKL
LSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDE
NSVSDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDE
KEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKL
PLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAP
NKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKA
VDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENG
KEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHI
MREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSA
IKKLRSPQYGRILRNYLRI
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccaaaaaagagctaaacaggaagccaaagca
gaagccacacaagaaaataaacaagagaacaaagctaaagaaagcaataaagccaaagag
ggcaaaattaaagaaaataaaaccaaagaaagcaaagtcaaagaaacagcgaaagagctt
gttcctgttaaaaaacttagttttaatgaggcgttagaagaattgttcgctaattcctta
agcgattgcgtttcttatgagtctatcattcaaatcagcgcgaaagtccccactctagcc
caagtcaaaaaaatcaaagaattgtgccaaaaataccaaaagaaattagtcagctcttca
gaatacgctaaaaaactcaatgcgattgacaagattaaaaaaactgaagaaaagcaaaaa
gttttaaacgaagaattagaagatggctatgactttttgaaagaaaaggattttttagag
tggagcagaagcgatagcccagtgcgcatgtatttgcgcgaaatgggggatataaaactt
ttaagcaaagatgaagagattgaattgagcaagcaaatccgcttgggtgaagacattatt
ttagacgcgatttgctcggtgccgtatttgattgattttatctatgcgtataaagacgct
ttaatcaatcgtgaaagaagggttaaagagcttttcaggagctttgatgatgacgatgaa
aatagtgtgagcgattctaaaaaagatgacgatagcgaagaagatgaagaaaacgaagaa
aggaaaaaagtcgtttctgaaaaagacaagaagcgtgtagaaaaggttcaagaaagcttt
aaagccctagacaaggctaaaaaagaatggcttaaagcccttgaagcccccatagatgaa
aaagaagatgaattggtgcgtttattgaccttagcttacaaacgccaaacgctcaaagac
agactctatgacttagagcctaccagcaaactgattaatgaattagtcaaaacgatggaa
accactttaaaaagcggcgatgggtttgaaaaagagttgaaacgcttggaatacaaactg
cccttattcaatgacactctcatcgcaaaccataaaaaaatccttgctaatatcactaac
atgactaaagaagatattatcgctcaagtgccagaagcgaccatggtgagcgtgtatatg
gatcttaaaaaactttttttgactaaagaagcgagcgaagaaggctttgatttagccccc
aacaagctaaaagaaattttagagcaaatcaaaagagggaaattgatttccgatcgcgct
aaaaacaaaatggctaaatccaatttaaggttggtggtgagcatcgctaaacgattcacg
agcagaggcttaccattcttggatttgattcaagagggtaatattggcttgatgaaagcg
gtggataaatttgagcatgaaaagggcttcaagttttctacctatgcgacctggtggatc
aaacaagctatcagcagagccatagccgatcaagcccgcactatccgcatccccattcac
atgattgacacgattaatcgcatcaataaagtcatgcgcaaacacattcaagaaaacggc
aaagagcctgatttggaagtggtggctgaagaagtggggctttcgttagataaagtgaag
aatgtgattaaggttactaaagagcctatcagtttggaaaccccagtcggcaatgatgat
gacggcaaatttggggatttcgtggaagataaaaatatcgttagctccattgatcacatc
atgcgcgaagatttaaaagcacaaattgaaagcgttttggatcagttgaatgagcgagaa
aaagcggtgatccgcatgcgttttgggcttttagacgatgaaagcgatcggactttagaa
gaaatcggtaaggaattgaatgttactagagaaagggtgcgccagattgaaagctctgcg
attaaaaaattgagaagcccgcaatacgggcgcattttaagaaactatttgcgtatttga
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