Helicobacter pylori B8: HPB8_1669
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Entry
HPB8_1669 CDS
T01262
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpl
Helicobacter pylori B8
Pathway
hpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPB8_1669 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpl03400
]
HPB8_1669 (mfd)
Enzymes [BR:
hpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPB8_1669 (mfd)
DNA repair and recombination proteins [BR:
hpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPB8_1669 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBI67226
UniProt:
D7FGB9
LinkDB
All DBs
Position
complement(1625965..1628964)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESKLAKEVISYFKPNIKAVLFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKELDPTTQMSL
KEDLLEIEIPPTLFSLDESSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDCERFKLLKVLENAQGYEDLEIHAHALEGFIALHSNHKIT
LLAPNKTILDNVLGTIEKSNMECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIAGKIIELAAERNLILGKKMDVHLAELEVFKSQ
AGFEYTSDQEKAIAEISKDLSSHRMMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDALVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTKLENLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKMDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TLTYSDEHKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagtctttatagagccttaaacaaaggctttgattatcaaatacttgct
tgtaaggattttaaagaatccaagctcgctaaagaagtcataagctattttaagccaaat
attaaagccgttcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttgagggagttttatcaggccttagaaaac
aagcaagaaactatcattattgcccctattagcgcgttattgcaccctttacccaaaaaa
gaacttttagagagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagagcattaaggaattggatcccaccactcaaatgagcctt
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggacgaatcatct
tataaggatctgaaaacaaaagtggagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaattgttaaaggttttagaaaacgcgcaaggttatgaagattta
gaaatccatgcgcatgccctagaaggctttatcgctttgcattcaaatcataaaatcacg
ctcctagcccccaataaaacgattttagacaatgtattaggcacgattgaaaaaagcaac
atggaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatc
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ctaaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctgttaccggtagaaaacttgcatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagttttctcaaactaaaagctaaa
gtcaggactaagcttttagagattgcaggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggatgtgcatttagcggagttggaagtttttaaatcgcaa
gcggggtttgaatacaccagcgatcaagaaaaggctatcgctgaaatttcaaaggattta
agctctcacaggatgatggatagacttttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctttagttgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggatcggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggttaattgatgcgcttgtaggcacgcatgcgattttaggcgcgaaattc
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaatatggcgctctctcaaattaaaggcatcagctctttaaaaaccccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attatttatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaaaatttaatccctaaactcaaaatcgctatt
ttgcattcccagattaacgctaacgagagcgaagaaatcatgctggagtttgctaagggg
aactatcaggttttattatgcacttctattgtggaatcagggatccatttgcctaacgcc
aacacgatcattatagataacgcgcagaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctattttctcatagaagatcaaaaa
agtttgaatgaacaggctctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtgtcgcttatcatgatttagaaatcaggggtggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcatcgcaagcgatagtttgaggctggat
ttataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggtaaaatggacgatttgagcgctcaatttttgcaaatcattacg
cttaaaatcttagccaaccagcttggcatcatcaaactttctaatttcaatcaaaacatc
acccttacttatagcgatgaacataaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcgttaa
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