Helicobacter pylori B8: HPB8_275
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Entry
HPB8_275 CDS
T01262
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpl
Helicobacter pylori B8
Pathway
hpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB8_275 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpl03019
]
HPB8_275 (pnp)
03016 Transfer RNA biogenesis [BR:
hpl03016
]
HPB8_275 (pnp)
Enzymes [BR:
hpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPB8_275 (pnp)
Messenger RNA biogenesis [BR:
hpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPB8_275 (pnp)
Transfer RNA biogenesis [BR:
hpl03016
]
Prokaryotic type
tRNA degradation factors
HPB8_275 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
KH_PARP14_3
Motif
Other DBs
NCBI-ProteinID:
CBI65832
UniProt:
D7FCC5
LinkDB
All DBs
Position
241587..243653
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEAFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEAHSEFSLEEIEWSLEKVK
KTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
HVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagaattcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccattattttggcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggtaaaatcccgggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagactaccgctaccctacccaaatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtctctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cccattaaaagcgtgagcgcttgcaggattgctagggtggataacgaatttatcattaac
cccaacacaagccttttgaatcaatccagtttggatttgtttgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgttaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagaggctttcacgccccaccaaaacgagctgctttttaaagaaagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcattaaaggc
attgaaagttctgctttgagcgagcgagaaaatgtttttagtgaaattgctaaaaaaatc
agcgaagcccactcagaattcagtttagaagaaattgaatggtctttagaaaaagtgaaa
aaaactgagataaggcgcatgattattcaagataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcacacagctccatt
ttattcactagggggcaaactcagagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgttccat
tacaatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagtattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcagggtctttagccctttatgcaagcggtgtggaaatttatgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttgagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggtatt
acggctatgcaaatggataccaaaatgagcggtattagattagaggttttataccaagcc
ttactccaagctaaagaagcgcggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagatcgtgatcaatttttcccatttgcccacgactgaaatttttaatgttgtgcccgat
aaaattgtagaaattatcggtcaagggggtcgtgtgattaaagagatagtggaaaaattt
gaagttaaaattgatttgaataaaccgagtggtgaagtgaaaatcatggggaataaagag
cacgttttaaagactaaggaatttattttaaactacttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaaaagaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaaacaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagtattcggtgtagggtgattagtttcaataag
ggtaaaatcgccttggatttggcttaa
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