Helicobacter pylori B8: HPB8_537
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Entry
HPB8_537 CDS
T01262
Symbol
topA3
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpl
Helicobacter pylori B8
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpl03032
]
HPB8_537 (topA3)
03400 DNA repair and recombination proteins [BR:
hpl03400
]
HPB8_537 (topA3)
Enzymes [BR:
hpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPB8_537 (topA3)
DNA replication proteins [BR:
hpl03032
]
Prokaryotic type
DNA Topoisomerases
HPB8_537 (topA3)
DNA repair and recombination proteins [BR:
hpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPB8_537 (topA3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
DUF4364
Motif
Other DBs
NCBI-ProteinID:
CBI66094
UniProt:
D7FD37
LinkDB
All DBs
Position
complement(508752..510812)
Genome browser
AA seq
686 aa
AA seq
DB search
MNNSVIIIESPNKVAKIREITGAKVFATIGHFMQLKSYDESNGFKPTFDYDQEKKKHIFE
MIEACKNKKVYIATDTDREGYAIGYMFYQKIKNVASSIYRAEFFEITPSGINKGLQNALL
FENTNKQMYQSALARRVADMLLGFTLSPYLGKALGQMKGCSVGRVQTPCLKLIVDRDREI
EKFKALPENEKVSYQIQAKINDSANREVTIKHCDEKGEEIKFNDKEEALKLFESLKDNKA
CLLKDLKNSVVETKPKKPFITSTLLEKASSMLGLSIIEVQSLAQNLFEAGLITYIRTDAE
SLSVEFLDETESFYAPIYKDLYLKREYKAGKQSQAEAHEAIRITHPHTTEDLESIVYNAN
ITNQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNEYFKCSVKGLKSAGFLAMFSKK
ELENDESNDDKDNKEKEQNAQFNLKIDDVLSLNDLVLATIKRNAPSAYKEADFVKLLENK
GIGRPSTYASYLPTLVKREYISISQDKKHIITPTHKGKRVVEVFENAYQFIIDLTYTKQM
EEMLDEIVENKSSYVDFISNLNSKCPKIEKLERNDDEIKPSSEGQITYIENILRDLQLNL
SEEFKNYKEDNRVAKAFLDRYIKEHEFFKKNSKKASSSNNDENRPATPKQISFAEMLAKK
HNVKLPKGFKYSMKVCGDFINEYHKK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagcgtcatcattattgaaagtcctaataaggtggctaagattagagaaatc
acaggagctaaggtctttgctaccatagggcattttatgcaacttaaaagctatgatgaa
agtaatggctttaagccgacttttgattatgaccaagaaaagaaaaaacatatttttgag
atgatagaggcgtgtaaaaacaaaaaggtttatatcgccactgacactgatagagagggc
tatgctataggctatatgttttatcaaaaaatcaaaaatgtagctagttctatttatagg
gcggagttttttgaaatcacaccaagtgggattaacaagggcttacaaaacgccctttta
tttgaaaacaccaataagcaaatgtatcaaagcgctttagcaagacgagttgcagatatg
ctcttaggttttacgctatccccttatttaggtaaggctttaggacaaatgaaaggttgt
agtgttgggcgagtgcaaaccccttgtttaaaactcattgtagatagagacagagagatt
gaaaaatttaaggctttacctgaaaatgagaaagtaagctatcaaattcaagctaagatt
aacgatagtgctaacagagaagtaactatcaagcattgtgatgaaaagggcgaagagatt
aaattcaatgataaagaagaggctttaaaactctttgagagcttaaaggataataaagct
tgtcttttaaaggatttaaaaaactctgttgtagagactaaacctaaaaagccctttatc
acttctacgcttttagaaaaagcaagttctatgcttggtttaagtattatcgaagtgcaa
tcactagctcaaaatctctttgaggctggactgattacttacattaggacagatgcggaa
agtttgagcgtggagtttttagatgagacagagagcttttatgcacctatttataaggac
ttgtatttaaaaagagaatacaaggctggcaagcaaagccaagcagaagcccatgaagca
attcgcatcacacacccccatactactgaagatttagaaagcatagtctataatgctaat
attactaatcaagacgctttaaaactctatcaactcatttttgaaaggactattgaaagt
caaggcaagaatgccatttatgacaagcaagatttgctctttaaaatcaaaaacgagtat
tttaaatgttctgtaaagggtttaaaaagtgctggatttttagcaatgttttctaaaaaa
gagctagaaaatgatgaaagtaatgatgataaagacaataaagaaaaagaacaaaacgca
caatttaatctaaaaattgatgatgtgttaagtctaaatgacttagttttagccaccatt
aaaagaaatgctccaagtgcttataaagaggcagattttgtcaagcttttagaaaataaa
ggcataggcagacctagcacttatgcgagctatttgcctacgcttgtaaaaagagaatat
atcagtattagccaagataaaaaacacattattacgcctacacataagggtaaaagagtg
gtagaagtgtttgaaaatgcttatcaattcattattgatttgacctatactaaacaaatg
gaagaaatgctagatgagattgtagaaaataaaagctcttatgtggattttatcagcaat
ttaaattctaaatgccctaagattgaaaagctagaaagaaatgatgatgagataaaacct
agcagtgaaggacaaatcacttatatagaaaatattttaagagatttgcaattaaattta
agcgaagagtttaaaaactacaaagaagacaacagagtggctaaggcgtttttagaccga
tacattaaagagcatgagttttttaagaaaaacagcaaaaaggctagtagctctaataat
gatgaaaatagacccgctacgcctaaacaaattagctttgctgagatgttagctaaaaag
cataatgtcaagctccccaaaggatttaaatatagtatgaaagtgtgtggggattttatc
aatgagtatcataagaagtag
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