Helicobacter pylori B8: HPB8_641
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Entry
HPB8_641 CDS
T01262
Symbol
rep
Name
(GenBank) Rep helicase, single-stranded DNA-dependent ATPase (Rep)
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpl
Helicobacter pylori B8
Pathway
hpl03420
Nucleotide excision repair
hpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPB8_641 (rep)
03430 Mismatch repair
HPB8_641 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpl03400
]
HPB8_641 (rep)
Enzymes [BR:
hpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPB8_641 (rep)
DNA repair and recombination proteins [BR:
hpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPB8_641 (rep)
MMR (mismatch excision repair)
Other MMR factors
HPB8_641 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
Viral_helicase1
AAA_30
DEAD
ResIII
GyrB_insert
DGKD_4H
Motif
Other DBs
NCBI-ProteinID:
CBI66198
UniProt:
D7FDE1
LinkDB
All DBs
Position
complement(613581..615608)
Genome browser
AA seq
675 aa
AA seq
DB search
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
AIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHTPYAALYENILEEFENTKK
KHDYIDYNDLLLLFKKAMLETPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVV
KSGKFNKPTLLNYNNNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPS
KRKGSASFFESKEVALALDICALIFNPKDIMAAIHILSCISDIGSNTAKDIHEALMLLGN
GDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKI
SLNGAKTLSDFFTLYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccctgagcaactaaaagcggccaaggctttgaaaggg
tataatttagtgattgcaagcgctggcacaggaaagacttctacgattgtggggcgcatt
ttatacctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgctagggtggctaaatattttaaatcaagctccaaaatt
gaagcgggcactttccatgcggtagcgtatcgctatttaaaagagcattacccaaactta
agcctgaagcaacctaaagaattaaaaaaacttttagaaagcatcgtggacactaaaaac
gccatagatgacgataaaaagccctacacttcgcagcatctctacgccctctattctctt
tacactaacgctctaaaacaagaagattttagcgcatggctttctagcaaaaaccctgaa
cacacgccatacgccgccctttatgaaaacattttagaagagtttgaaaacactaaaaaa
aagcatgattatattgactataacgacttgctgctgctctttaaaaaagcgatgctagag
acacctagcccttataaagaagtgctttgcgatgaatttcaagacactaaccccttacaa
gaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgatcag
agcatttacgcttttaacggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccgagttttcacgctcaccaaaaactaccgctcttctaaagagattttggat
ctcgctaatcaagtgatacagcgcaacgagcgcatttaccctaaaaatttggaagtggtg
aaatcagggaaattcaataaacccacgcttttaaattacaacaacaatatcgcgcaatgc
caagacatcgctaaacgcattgtcatgcgaaagaattttaaagaagtggcggtgattttt
aggaataacgccagcgcggatcaattagaagccgctttaagatcccacaacgtgccaagc
aaacgaaaagggagcgcgagtttttttgaatccaaagaagtggcgttagcgttagatatt
tgcgcgctcatctttaaccctaaagacattatggcagcgattcacattttaagctgtatc
agcgatattggctctaacaccgctaaagacattcatgaggccttaatgcttttaggcaat
ggtgatctcaaactagccctaacccacccaagcaaagaagccaaaatttacaccaagaaa
aaagaaatcacctctatggggctttttgaagaaatttttgccctagaaaacagctcaagg
tttaatagcgtgatcgataaggcgtttcattcgcacccggtgttgatgcaccctaaaatc
tcactcaatggggctaaaacgcttagcgattttttcactctttataccaaagcccctacc
cattcccctagcgctttaatcaaacacattctagaaagcgcgttttttcaaaccttcaaa
acacgccttttaaaagagcgatccaaaaataaggacggctcttataacgaatttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttggcgaaaaat
taccaaaatttagggcgttttttaaacggcactttaataggttctagtgaagccacgcaa
ggtgagggcgtgaatctattgagcgtgcatgcttctaaaggcttagaatttaaagacgtt
tatattatagatttaatggagggccgtttccctaaccacaagctcatgaataccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcaaaaaacgaattgagggaaaacgctaaacctaaagagcataagcct
tcggtgtttttgtatgaagcgggacttttgaaacctgattcaaaataa
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