Helicobacter pylori SJM180: HPSJM_04645
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Entry
HPSJM_04645 CDS
T01323
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase (rep)
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpm
Helicobacter pylori SJM180
Pathway
hpm03420
Nucleotide excision repair
hpm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSJM_04645
03430 Mismatch repair
HPSJM_04645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpm03400
]
HPSJM_04645
Enzymes [BR:
hpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSJM_04645
DNA repair and recombination proteins [BR:
hpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSJM_04645
MMR (mismatch excision repair)
Other MMR factors
HPSJM_04645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_12
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADO02512
LinkDB
All DBs
Position
932562..934589
Genome browser
AA seq
675 aa
AA seq
DB search
MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN
AIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSTKNPEHTPYAAFYENILDEFENTKK
KHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVV
KSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPS
KRKGSASFFESKEVALALDICVLLFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGN
GDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVINKAFHSHPVLMHPKI
SLNGAKMLSDFFTLYTKAPIHSPSALIKHIIESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGHFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgctagaaactttgcaattaaaccctgagcaactaaaagcggccaaggctttacaaggg
cataatttaatcattgcgagcgctggcacgggaaagacttctaccattgtggggcgcatt
ttacacctgctagataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgcaagggtggctaaatactctaaattaagctccaaaatt
gaagcgggcactttccatgcggtggcgtatcgctatttaaaagagcattacccaaactta
agcctgaagcaacctaaggaactaagaaagcttttagaaagcattgtggacactaaaaac
gccatagatgacgataaaaagccctacacttcgcagcatttatacgccctttattctctt
tacactaacgccttaaaacaagaagattttagcgcatggctttctactaaaaaccctgaa
cacacgccatacgccgccttttatgaaaacattttagacgaatttgaaaacaccaaaaaa
aagcataattatattgactataacgacttactgctattatttaaaaaagcgatgctagaa
agacctagcccttataaagaagtgctttgcgatgagtttcaagacactaaccccttacaa
gaatccattttagacgctatcaaccctcccagtttgttttgtgtgggcgattacgatcag
agcatttacgcttttaacggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccgagttttcacgctcactaaaaattaccgctcttctaaagagattttagat
ctcgccaatcaagtgatacagcataacgagcgcatttaccctaaaaatttagaagtggtg
aaatcagggaaattcaataaacccacgcttttaaattacaacgacaatatcgcgcaatgc
caagacatcgccaaacgcattgtcatgcgaaaaaattttaaagaagtggcggtgattttt
aggaataacgccagcgcggatcaattagaagccgctttaagatcccacaatgtgccaagc
aaaagaaaagggagcgcgagtttttttgaatccaaagaagtggcgttagcgttagatatt
tgcgtgctactatttaaccctaaagacattatggcagcgattcacattttaagctatatc
agcgatattggctctaacaccgctaaagacattcatgaagccttaatgcttttaggcaat
ggcgatctcaaactagccctaacccacccaagcaaagaagccaaaatttacacgaagaaa
aaagaaatcacctccatggggctttttgaagaaatttttgccctagaaaacagctcaagg
tttaatagcgtgataaataaggcgtttcattcgcacccagtattgatgcaccctaaaatc
tcactcaatggggctaagatgctgagcgattttttcactctttataccaaagcccctatt
cattcccctagcgctttaatcaaacacattatagaaagcgcgttttttcaaacctttaaa
acacgccttttaaaagagcgatccaaaaataaggacggctcttataacgagtttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttagcaaaaaat
taccaaaatttagggcattttttaaacggcactttaataggctcaagtgaagccacgcaa
ggtgagggcgtgaatctattgagcgtgcatgcttctaaaggcttagaatttaaagatgtt
tatattatagatttaatggaggggcgtttccctaaccacaagctcatgaataccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcgaaaaacgaattgagagaaaacgccaaacctaaagagcataaaccc
tcggtgtttttgtatgaagcggggcttttgaaacccgattcaaaataa
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