Helicobacter pylori SJM180: HPSJM_04715
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Entry
HPSJM_04715 CDS
T01323
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hpm
Helicobacter pylori SJM180
Brite
KEGG Orthology (KO) [BR:
hpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpm03016
]
HPSJM_04715 (truD)
Enzymes [BR:
hpm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
HPSJM_04715 (truD)
Transfer RNA biogenesis [BR:
hpm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HPSJM_04715 (truD)
Prokaryotic type
HPSJM_04715 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ADO02526
UniProt:
E1Q035
LinkDB
All DBs
Position
958997..960142
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AA seq
381 aa
AA seq
DB search
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
HIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYH
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFGKFNDNHQEG
LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLS
VNSNALKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKK
ALYAKNLSFEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKG
SYASALLKEIKHEKGENNDEF
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaattttatgcccctattgcatgcttataaccatgcgagcattgattttcat
ttcaattctagcgctagggatttttgcgtgcatgaagtgcctttgtatgagtttagtaac
acaggcgaacatgccgttattcaagtgaggaaaagcggtttaagcactttagaaatgctc
cacattttttctcaaattttaggggtaaaaatcgctgaattgggttatgcgggcttgaaa
gataaaaacgcgctgacgactcaattcatctcactccctaaaaaatacgcccctttatta
gaaaaaaatacgcataatttgcaagaaagaaaccttaaaatcctatctttgaattaccat
cacaataaaatcaaattagggcatttaaagggtaatcgcttttttatgcgttttaaaaaa
atgacccccttaaacgctcaaaagactgaacaggttttagaacaaatcgcgcagtttggc
atgcctaattattttggctcgcaacgctttgggaagttcaatgacaaccaccaagagggt
ttaaaaatcttgcaaaatcaaacgaaattcgcccaccaaaaattaaacgcttttttaatt
tcaagctatcaaagttatttgtttaacgcgcttttaagcaaacgattagaaatcagtaaa
atcattagcgcttttagtgtcaaagaaaatttagaattttttaaacaaaaaaatttaagc
gttaattcaaacgccctaaaagcccttaaaaaccaagcccacccctttaaaatcttagaa
ggcgatgtgatgtgccattacccttatgggaagttttttgacgctttagaattagaaaaa
gagagcgaaaggtttttgaaaaaagaagctgtgcctacggggttattagatggcaaaaaa
gctctttatgcaaaaaatttgagttttgaaattgaaaaagaattccagcataacctttta
aatagccatgctaaaacgctaggctctaggcggtttttttgggtgtttgcagaaaatgta
acttctcaatatatcaaagaaaaagcgcaatttgaattgggattttacttgcctaaaggg
agttatgcgagcgcgttgctcaaagaaatcaaacatgagaaaggagaaaataatgacgaa
ttttga
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