Helicobacter pylori SJM180: HPSJM_07540
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Entry
HPSJM_07540 CDS
T01323
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpm
Helicobacter pylori SJM180
Pathway
hpm03420
Nucleotide excision repair
hpm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSJM_07540
03430 Mismatch repair
HPSJM_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpm03400
]
HPSJM_07540
Enzymes [BR:
hpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSJM_07540
DNA repair and recombination proteins [BR:
hpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSJM_07540
MMR (mismatch excision repair)
Other MMR factors
HPSJM_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
RNase_H_2
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
ADO03064
LinkDB
All DBs
Position
complement(1516318..1518363)
Genome browser
AA seq
681 aa
AA seq
DB search
MGFEKSILGNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLT
LTFTNKASKEMQKRALKLLKNQALIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDE
VKTLCKQLKISNFRASISQIKNGMMDLSMQDSECHKAYELYQNALKKDNLVDFDDLLCLS
LKILQDNEKLAKEISERYYYIMVDEYQDTNALQLEFLKQLSCTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHVVAKKDDRFFIKRVLNKPPRGLGKITQEWIFSLLDDEDLN
LEEALKLVAFKDKLNPKNEYALKQFIAMIGRLREAFEISVEEFCERFLEETNLLKSYEKE
DNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESVLDVHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKIS
CSPSVFLEEAQLLQQDRPPKHDYQKDTPIKVGDLIKHKIFGTGRVLGVEKGLSGVCLKIN
CGGNVYDKISEKFVEKVDNEF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgaaaaaagcattttaggcaatttaaacgaagcgcaaaaaatcgctgcaagc
cacattcaagggccattgctcattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgtttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaaaaaagggctttgaaattgttgaaa
aaccaagcccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgagccttttaaaaagagcatgcgatttttcggtattagatagcgatgaa
gtcaaaacgctgtgcaaacagctcaaaatttcaaactttagagccagtatttctcaaatc
aaaaacggcatgatggatttgagcatgcaagatagcgaatgtcataaagcctatgagctt
tatcaaaacgcgctcaaaaaagacaatttagtggattttgacgatttgctttgtttaagc
cttaagattttacaagataatgaaaaactcgccaaagagattagcgaacgctattattat
attatggtagatgagtatcaagacacgaacgccctgcaattagaatttttaaaacaattg
agttgtacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaaata
gtgaaattagagaccaattatcgctctagcgctgaaatcttagcgtgcgctaattccctc
atcagccataaccaacaccgccacattaaaacgcttcaaagtttcaaaggttcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcctggatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtaccgctta
aacgggcttagccgtagcattgaagagagcttgaacgctttgaatatcccttataggctc
attggtgcggtgagtttttatgaaagagctgaggttaaagacgctttggcgttcatgcat
gtagtggcgaaaaaagacgatcgcttttttattaagcgcgttttaaacaagcccccaaga
ggtcttggcaagatcactcaagaatggattttttctcttttagatgatgaagatttgaat
ttagaagaagcgttaaaacttgtggcgtttaaagacaaattaaaccctaaaaacgaatac
gctttgaaacaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgagcggtttttagaagagactaatcttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttaagtttagtgaaagagcat
tttaaaactaaccccacgcattctttactggattttttgaatgaaagcgttctagatgtc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaagggctta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttggaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcagctctcttatgtcaaagagcgttcgtattttgggaggaaaatttct
tgctcgccctctgtgtttttagaagaagcccagttgctccaacaagacagaccccctaaa
cacgattaccaaaaagatacgcccattaaagtgggggatttgatcaaacataagattttt
ggcaccgggagggttttaggcgtagaaaaaggtttgagcggtgtgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatttcagaaaaatttgtagaaaaagtggataacgag
ttttga
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